kuixu/DeepCryo

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Created almost 4 years ago
Updated almost 4 years ago

kuixu/DeepCryo

kuixu

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Deep learning based methods for Cryo-EM density map

kitti_object_vis

KITTI Object Visualization (Birdview, Volumetric LiDar point cloud )

Jupyter Notebook

3d-deep-learning

3D Deep Learning works

awesome-cryoem

A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.

alphafold

Install alphafold on the local machine, get out of docker.

Linear-Multihead-Attention

Reproducing the Linear Multihead Attention introduced in Linformer paper (Linformer: Self-Attention with Linear Complexity)

PrismNet

Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure

keras_multi_gpu

Multi-GPU training for Keras

3ddensenet.torch

3D DenseNet(torch version) for ModelNet40 dataset

VRmol

VRmol: an Integrative Web-Based Virtual Reality System to Explore Macromolecular Structure

pytorch_online_plotter

Online meter ploter for pytorch. Real time ploting Accuracy, Loss, mAP, AUC, Confusion Matrix

MiniBatchSVM

Mini-batch SVM / Logistic Regresion, Online learning for large scale data.

StatisticsLearning-JunZhu

Statistics Learning Course by JunZhu

thu_vpn_linux

Tsinghua Univ. VPN ( Linux version )

kuixu.github.io

multiGPUtask

Submit Multi-GPU Tasks in a queue with shell scripts based on NVIDIA-SMI.

conference-paper

Conference paper list and word count

StatisticalInference

Statistical Inference Course and Homework

xmail

Command line email tool, notify tool, very easy-to-use. Perl and Bash shell version provide.

ResMap

ResMap, Compute the local resolution of 3D density maps, (support python3 and maps in variant shape)

label-tomo

Label tomography images and plot

12l-mbi

Automatically exported from code.google.com/p/12l-mbi

oh-my-ubuntu

wgan.torch

Machine_Learning_Yearning

Machine_Learning_Yearning By Andrew Ng

CountCys

Count the number of Cys in a series of fasta formatted protein sequences

meituan

Parse meituan comment with picture.

Concu

Concu : Concurrent to run optionally numbers of commamdline.

dl-torch

mrcfile

parseprobe

Automatically Parse Stellaris® Probe Designer Data using Javascript code.

learning-bioinfo

Learning Bioinformatics weekly

SLIC-CryoEM

CryoEM density map Segmentation

swalign

Automatically exported from code.google.com/p/swalign

dl-docker-cpu

An CPU version all-in-one Docker image for deep learning. Contains all the popular DL frameworks (TensorFlow, Theano, Keras, Lasagne, Torch, Caffe, etc.)