kr-colab/mapNN

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Language
Python
License
MIT License
Created about 1 year ago
Updated 5 months ago

kr-colab/mapNN

kr-colab

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neural network for estimating demographic maps from SNPs

ReLERNN

Recombination Landscape Estimation using Recurrent Neural Networks

diploSHIC

feature-based deep learning for the identification of selective sweeps

locator

deep learning prediction of geographic location from individual genome sequences

discoal

discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

popvae

genotype dimensionality reduction with a VAE

FILET

Software for detecting introgression using supervised machine learning

shIC

The Soft/Hard Inference through Classification tool for detecting hard and soft selective sweeps

disperseNN

Estimating dispersal using deep neural networks

spaceness

Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

stairwayPlotMisorient

Liu and Fu's StairwayPlot program modified to estimate a mispolarization parameter

disperseNN2

estimating dispersal distance from georeferenced polymorphisms

colab_wiki

spatial_sims_standard

standardizing spatial simulation slim scripts with a template

Jupyter Notebook

product-space-FEM

Jupyter Notebook

im_clam

package for exact calculation of the joint site frequency spectrum under Isolation with Migration models as described in Kern and Hey (2017) http://www.genetics.org/content/207/1/241

greatapes_sims

Jupyter Notebook