kpzoo/EpiFilter

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21
Rank 1,084,038 (Top 22 %)
Language
MATLAB
License
GNU General Publi...
Created over 4 years ago
Updated 12 months ago

kpzoo/EpiFilter

kpzoo

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Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional approaches

model-selection-for-epidemic-renewal-models

Uses accumulated prediction error (APE) to select among renewal model formulations

growth-rates

Code for inferring time-varying epidemic growth rates

information-in-epidemic-curves

Code to recreate figures from related paper

End-of-epidemic-declarations

Matlab and R code for computing the probability of elimination of an infectious disease epidemic

APEestim

R package for effective reproduction number estimation using APE method

snyder-integrate-fire-code

Matlab code for analysing fly vision using the Nikolic model and Snyder filters