kpzoo/End-of-epidemic-declarations

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Created about 4 years ago
Updated almost 4 years ago

kpzoo/End-of-epidemic-declarations

kpzoo

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Matlab and R code for computing the probability of elimination of an infectious disease epidemic

EpiFilter

Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional approaches

model-selection-for-epidemic-renewal-models

Uses accumulated prediction error (APE) to select among renewal model formulations

growth-rates

Code for inferring time-varying epidemic growth rates

information-in-epidemic-curves

Code to recreate figures from related paper

APEestim

R package for effective reproduction number estimation using APE method

snyder-integrate-fire-code

Matlab code for analysing fly vision using the Nikolic model and Snyder filters