klamt-lab/CommModelPy

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Apache License 2.0
Created over 4 years ago
Updated over 3 years ago

klamt-lab/CommModelPy

klamt-lab

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Create stoichiometric metabolic network models of single-species or multi-species communities

straindesign

StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy

autopacmen

Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

GDP-Fucose_OptMet2023_Paper

Contains all relevant data of the 2023 GDP-Fucose paper.

Component Pascal

Kinetic-models-of-E.-coli

Kinetic model of E. coli's central metabolism under anaerobic conditions. These models are part of a submitted manuscript of Boecker et al.

Models_E.coli_High_ATP_Demand

Kinetic and stoichiometric model for the simulation of enforced ATPwasting in E.coli

Component Pascal

Anleitung

Anleitung zur Benutzung unserer GitHub-Organisation

OptMSP

Jupyter Notebook

CNApy

The Klamt lab is the main developer of CNApy, an integrated environment for metabolic network analysis which you can find here: https://github.com/cnapy-org/CNApy

CNAhelpers

A bunch of functions that come in handy when working with CNA

MEMO

Models and scripts for the MEMO paper

TCOSA

Thermodynamic Cofactor Swapping Analysis