• This repository has been archived on 27/Jan/2018
  • Stars
    star
    1
  • Language
    R
  • Created over 7 years ago
  • Updated almost 7 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Dirichlet adaptive shrinkage for compositional data

More Repositories

1

CountClust

A R package for Grade of Membership model and Visualization of counts data:
R
31
star
2

GSSG

Gene Set + S2G strategy annotations analyzed for disease architecture
R
28
star
3

Logolas

R package for Enrichment Depletion Logos (EDLogos) and String Logos
R
27
star
4

CorShrink

R package for adaptive correlation and covariance matrix shrinkage.
R
23
star
5

aRchaic

Exploration, clustering, visualization and classification of DNA damage patterns
R
18
star
6

classtpx

An R package for Semi-supervised Topic models
R
6
star
7

cellcycleR

R package for cell cycle phasing and analysis
R
6
star
8

ecostructure

Clustering and Visualization of species abundance patterns in ecological data
R
6
star
9

Imperio

Repository for performing DeepBoost, S2G linking and Imperio models linking deep learning models with complex traits
R
5
star
10

tmcmcR

A Rcpp package for fitting RWMH, TMCMC, adaptive RWMH/TMCMC, MC3 and TMC3 chains.
R
5
star
11

metagenomics

This is an application of some statistical methods for clustering of samples based on OTU abundance and also some novel differential analysis.
HTML
3
star
12

tmcmc

A new alternative to MCMC- this repo will store the latest R and Matlab scripts and other important stuff that have been
MATLAB
2
star
13

Logolas-paper

Codes and tex files reproducing the Logolas paper
PostScript
1
star
14

dashr

R package for Dirichlet adaptive shrinkage and smoothing
R
1
star
15

Robocov

Sparse and Robust estimation of covariance, correlation and precision matrices when data has missing entries
R
1
star
16

singlecellLDSC

single cell + disease
HTML
1
star
17

bioviz

Interactive Visualization of statistics and genomics using Javascript
Processing
1
star
18

singlecellseq

iPSC single cell analysis
HTML
1
star
19

aRchaic-old-2

R package for ancient DNA damage modeling
R
1
star
20

ordtpx

An R package for topic model on ordered features
HTML
1
star
21

Obesity

This repository hosts all the relevant R codes, word docs for the Obesity Project I am currently doing with Shajith.
R
1
star
22

covtpx

Covaraite adjusted Grade of Membership Model (covGoM)
R
1
star
23

flashr

Factor Loading with Adaptive Shrinkage in R
C++
1
star
24

wave-sfa

This repository is aimed at applying wavelet transform for driving topic models and sparse factor analysis with ordered variables
HTML
1
star
25

singlecellRNAseqData

Bioconductor data package for hosting single cell RNA-seq data
R
1
star
26

CREGENE_GWAS_benchmark

Benchmarking different ENCODE CRE-gene links based on disease heritability
R
1
star
27

deeptpx-ghpages

Deep topic model for clustering RNA-seq expression data
HTML
1
star
28

GxT

GxT is a software interface for computing gene trait association score
1
star
29

methClust

Grade of Membership clustering in methylation data
C
1
star
30

GTExV6Brain

Bulk-RNA data across brain samples GTEx V6 project
1
star
31

wallace_analysis

Bird presence absence data analysis around Wallacea
R
1
star
32

WEAVER

Word Enrichment Analysis using VEctor Representations
C
1
star