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CountClust
A R package for Grade of Membership model and Visualization of counts data:GSSG
Gene Set + S2G strategy annotations analyzed for disease architectureLogolas
R package for Enrichment Depletion Logos (EDLogos) and String LogosCorShrink
R package for adaptive correlation and covariance matrix shrinkage.aRchaic
Exploration, clustering, visualization and classification of DNA damage patternsclasstpx
An R package for Semi-supervised Topic modelscellcycleR
R package for cell cycle phasing and analysisecostructure
Clustering and Visualization of species abundance patterns in ecological dataImperio
Repository for performing DeepBoost, S2G linking and Imperio models linking deep learning models with complex traitstmcmcR
A Rcpp package for fitting RWMH, TMCMC, adaptive RWMH/TMCMC, MC3 and TMC3 chains.metagenomics
This is an application of some statistical methods for clustering of samples based on OTU abundance and also some novel differential analysis.tmcmc
A new alternative to MCMC- this repo will store the latest R and Matlab scripts and other important stuff that have beenLogolas-paper
Codes and tex files reproducing the Logolas paperdashr
R package for Dirichlet adaptive shrinkage and smoothingRobocov
Sparse and Robust estimation of covariance, correlation and precision matrices when data has missing entriessinglecellLDSC
single cell + diseasesinglecellseq
iPSC single cell analysisaRchaic-old-2
R package for ancient DNA damage modelingordtpx
An R package for topic model on ordered featuresObesity
This repository hosts all the relevant R codes, word docs for the Obesity Project I am currently doing with Shajith.covtpx
Covaraite adjusted Grade of Membership Model (covGoM)flashr
Factor Loading with Adaptive Shrinkage in Rwave-sfa
This repository is aimed at applying wavelet transform for driving topic models and sparse factor analysis with ordered variablessinglecellRNAseqData
Bioconductor data package for hosting single cell RNA-seq dataCREGENE_GWAS_benchmark
Benchmarking different ENCODE CRE-gene links based on disease heritabilitydeeptpx-ghpages
Deep topic model for clustering RNA-seq expression dataGxT
GxT is a software interface for computing gene trait association scoredash
Dirichlet adaptive shrinkage for compositional datamethClust
Grade of Membership clustering in methylation dataGTExV6Brain
Bulk-RNA data across brain samples GTEx V6 projectwallace_analysis
Bird presence absence data analysis around WallaceaWEAVER
Word Enrichment Analysis using VEctor RepresentationsLove Open Source and this site? Check out how you can help us