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ACC-UNet
ACC-UNet is A Completely Convolutional UNet model inspired from transformer-based UNetsGNN_DOVE
Code for "Protein Docking Model Evaluation by Graph Neural Networks"DOVE
A Deep-learning based dOcking decoy eValuation mEthodCryoREAD
CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.DiffModeler
DiffModeler: a diffusion model based protein complex structure modeling tool.Emap2secPlus
Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep LearningEmap2sec
Emap2sec is a computational tool to identify protein secondary structuresDistance-AF
Public version for Distance-AFDAQ
DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM MapsDeepMainMast
DeepMainmastGO2Sum
GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function prediction methods.VESPER
RL-MLZerD
EM-GAN
EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. It is based on 3D deep learning. It is aimed to help protein structure modeling from cryo-EM maps.Flex-LZerD
Domain-PFP
Domain-PFP is a self-supervised method to predict protein functions from the domainsContactGAN
Contact map denoising using GANs3d-af_surfer
DAQ-Refine
DistPepFold
Public version for DistPepFoldAFM-RL
NNTox
idp_lzerd
Modeling disordered protein interactions from biophysical principlesOC_Finder
2DKD
Two-Dimensional Krawtchouk Descriptors for Content Based Local Image SearchcontactPFP
Protein function prediction based on predicted residue-residue contactsNaviGO
Tools for analyzing and visualizing Gene Ontology gene function termsMAINMASTplugin
Chimera plugin for MAINMASTAttentiveDist
NuFold
NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center RepresentationAttention_AD
Attention LSTM code for "Activation of gene expression by nucleosome detergents"ComplexModeler
MASQ_PPI
GNN_pocket
The project of pocket prediction based on GNN modelMAINMASTseg
Automated Segmentation Program for EM map with symmetryLove Open Source and this site? Check out how you can help us