• Stars
    star
    2
  • Language
    Python
  • Created over 3 years ago
  • Updated over 1 year ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Attention LSTM code for "Activation of gene expression by nucleosome detergents"

More Repositories

1

ACC-UNet

ACC-UNet is A Completely Convolutional UNet model inspired from transformer-based UNets
Python
99
star
2

GNN_DOVE

Code for "Protein Docking Model Evaluation by Graph Neural Networks"
Python
57
star
3

DOVE

A Deep-learning based dOcking decoy eValuation mEthod
Python
54
star
4

CryoREAD

CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.
Python
28
star
5

DiffModeler

DiffModeler: a diffusion model based protein complex structure modeling tool.
Python
27
star
6

Emap2secPlus

Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning
Jupyter Notebook
17
star
7

Emap2sec

Emap2sec is a computational tool to identify protein secondary structures
Jupyter Notebook
16
star
8

Distance-AF

Public version for Distance-AF
Python
16
star
9

DAQ

DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps
C
13
star
10

DeepMainMast

DeepMainmast
C
11
star
11

GO2Sum

GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function prediction methods.
Jupyter Notebook
10
star
12

VESPER

C
10
star
13

RL-MLZerD

C
10
star
14

EM-GAN

EM-GAN is a computational tool, which enables capturing protein structure information from cryo-EM maps more effectively than raw maps. It is based on 3D deep learning. It is aimed to help protein structure modeling from cryo-EM maps.
Jupyter Notebook
10
star
15

Flex-LZerD

Python
9
star
16

Domain-PFP

Domain-PFP is a self-supervised method to predict protein functions from the domains
Jupyter Notebook
8
star
17

ContactGAN

Contact map denoising using GANs
Python
8
star
18

3d-af_surfer

Python
7
star
19

DAQ-Refine

Jupyter Notebook
6
star
20

DistPepFold

Public version for DistPepFold
Python
5
star
21

AFM-RL

Python
5
star
22

NNTox

Python
4
star
23

idp_lzerd

Modeling disordered protein interactions from biophysical principles
Python
4
star
24

OC_Finder

Python
4
star
25

2DKD

Two-Dimensional Krawtchouk Descriptors for Content Based Local Image Search
MATLAB
4
star
26

contactPFP

Protein function prediction based on predicted residue-residue contacts
Python
3
star
27

NaviGO

Tools for analyzing and visualizing Gene Ontology gene function terms
Perl
3
star
28

MAINMASTplugin

Chimera plugin for MAINMAST
Objective-C
3
star
29

AttentiveDist

Python
3
star
30

NuFold

NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation
Jupyter Notebook
3
star
31

ComplexModeler

Python
2
star
32

MarkovFit

C
1
star
33

MASQ_PPI

Python
1
star
34

GNN_pocket

The project of pocket prediction based on GNN model
C
1
star
35

MAINMASTseg

Automated Segmentation Program for EM map with symmetry
C
1
star