• Stars
    star
    300
  • Rank 138,870 (Top 3 %)
  • Language
    TeX
  • Created over 11 years ago
  • Updated about 10 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Learn how to use markdown for science

Markdown for scientific writing

Markdown is a fantastic and minimalist tool for authoring scientific documents. This repository is a collection of tools, resources, and tutorials to simplfy your workflow. If you spend a little time going through the tutorials you'll be able to stop using Microsoft Word entirely and write clean, lightweight markdown files that can easily be version controlled by git. Collaboration with your coauthors would also become way more powerful and simpler.

Copying this repo

If you have git installed, simply clone this repo and you'll have a full set of examples to work with. Otherwise just hit the zip button at the top to download a copy.

git clone https://github.com/karthik/markdown_science.git

Documentation

A full set of documentation is slowly coming together in the wiki. Feel free to contribute. If you have ideas for examples, add them to the repo and send in a pull request.

More Repositories

1

wesanderson

A Wes Anderson color palette for R
R
1,766
star
2

holepunch

Make your R project Binder ready
R
249
star
3

rdrop2

Dropbox Interface from R
R
248
star
4

rstudio2019

Resources from my Rstudio::conf 2019 talk
220
star
5

testdat

A package to run unit tests on tabular data
R
141
star
6

life-hacks

Some life hacks documented
97
star
7

smb_git

A review paper describing how git can be used to improve reproducibility in science
Shell
85
star
8

rDrop

Programmatic interface to Dropbox
R
64
star
9

dashboard

A R package dashboard generator
CSS
44
star
10

rdat

An R interface to data Dat
R
43
star
11

ddd

data, data, data paper
TeX
43
star
12

ggplot-lecture

My lecture on ggplot at Cal (spring 2013)
TeX
41
star
13

Rtools

Sublime text package for R
Python
33
star
14

zenodo

Deposit data (or any research object) into Zenodo
R
17
star
15

woRstfigures

woRst R figures
12
star
16

fujifilm

Just a collection of my notes on the Fujifilm X-T2 and X-mount ecosystem
12
star
17

randNames

Random username (+other useful info) generator
R
11
star
18

binder-test

R
11
star
19

git_intro

A quick introduction to git
CSS
10
star
20

sheetseeR

A quick and easy interface to Google Docs + SheetSee.js
R
9
star
21

dcTemplate

Data Carpentry R lesson template
HTML
7
star
22

mozfest-data-lessons

Repo for the data carpentry session at Mozfest
5
star
23

dlab-advanced-r

Repo with material on learning testing, documentation, and package development in R.
5
star
24

mapboxer

Mapbox from R
HTML
5
star
25

ggit

Git visualization tools for git2r
R
5
star
26

software-mapping-workshop

Slides, notes, and resources for the CZI Essentials of Open Source grantee meeting, December 9th, 2020
4
star
27

colorPalette

A colorPalette API for R
4
star
28

webnativesci

OKFestival session on tools and skills for web native science
JavaScript
4
star
29

sevilla15

Repo for workshop at Sevilla, February 2015
CSS
3
star
30

coyote

Functions from my .rprofile now moved to a package
R
3
star
31

esa_data_viz

ESA 2013, Data Visualization in R workshop
R
3
star
32

Rtools3

R tools for Sublime text 3
Python
3
star
33

stat290

R
2
star
34

bmc_post

Set of files for BMC blog post
2
star
35

rProvenance

A prototype for a provenance library implementation in R
R
2
star
36

gigadb

R
2
star
37

RRR

The reproducibility lexicon project at BIDS
Python
2
star
38

commcall

R
2
star
39

rthings

Provides short lists of fake data for use in examples and demos
R
2
star
40

tradeoff

revisiting classic life-history tradeoffs with realistic assumptions.
R
2
star
41

api-best-practices

plos comp bio paper draft
2
star
42

almviz

ALM Visualization from the PLOS Hackathon
CSS
2
star
43

badge-test

1
star
44

ecotools

Find out what tools other scientists use to stay productive
1
star
45

roweb-test

HTML
1
star
46

distill

HTML
1
star
47

2014-02-13-UNSW

Repository for the UNSW Software Carpentry Bootcamp
Python
1
star
48

karthikram.github.com

My Jekyll-Bootstrap github page
JavaScript
1
star
49

binder-test-docker-tidyverse

R
1
star
50

misc-scripts

Python
1
star
51

nick_dates

R
1
star
52

dygraph-test

R
1
star
53

themegray4lyfe

HTML
1
star
54

2014-10-31-nw

Repository for the NorthWestern University bootcamp
Perl
1
star
55

urssi_figures

Repository accompanying "A Survey of the State of the Practice for Research Software in the United States"
HTML
1
star
56

species_interactions

1
star
57

eeguide

A guide to using the ecoengine
CSS
1
star
58

R-Icon

An alternative icon for R.
1
star
59

demo

R
1
star
60

antweb_paper

Paper on AntWeb
TeX
1
star
61

sparse

TeX
1
star
62

write-with-make

A quick repo with an example of how to write with Makefiles
TeX
1
star
63

ucsf19

Notes and slides from my workshop on open code at UCSF
1
star
64

shiny

Short Shiny tutorial
R
1
star
65

DataCabin

1
star