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ococo
Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.Phylign
Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)samsift
SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.smbl
SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.NanoSim-H
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.rnftools
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.svg42pdf
ligm-business-cards
LaTeX and OpenOffice templates for business cards.attotree
Rapid estimation of phylogenetic trees using sketchingtp-zpevnik
Zpฤvnรญk Technickรฉ pลestรกvky. Vรฝslednรฉ (automaticky generovanรฉ) zpฤvnรญky se nachรกzรญ na http://karel-brinda.github.io/tp-zpevnik/.dymas
Dynamic Mapping Simulator.random-genome
A simple program to generate a high-entropy random genomefasta2kmers
A simple program to split sequences from a FASTA/FASTQ file into k-mers in the FASTA format.de-MiniPhy-BIGSIdata
Client for downloading and a phylogenetic decompression of the BIGSIdata de Bruijn graphscmake-ext
CMake external projects.harvard-clusters-example
A simple Snakemake pipeline that can be run on all three Harvard clustersgalitime
Software for benchmarking scientific software.simplitigs-supplementary
Data and pipelines for Simplitigs as an efficient and scalable representation of de Bruijn graphsmetameda
MetaMedA: meta-analysis using PubMedunprotect-docx
Bash script to unprotect password-protected unencrypted DOCX documents.Love Open Source and this site? Check out how you can help us