jtextor/epitope-prediction jtextor/epitope-prediction

  • Stars
    star
    15
  • Rank 1,371,379 (Top 28 %)
  • Language
    R
  • Created over 8 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
jtextor/epitope-prediction
github

jtextor

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.

More Repositories

1

dagitty

Graphical analysis of structural causal models / graphical causal models.
JavaScript
256
star
2

cpm

Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.
JavaScript
11
star
3

immunet

Python
9
star
4

insilico-trials

Simulation models for immunotherapy and chemotherapy trials
R
5
star
5

limmsim

C++
5
star
6

MotilityLab

R package for analyzing cell tracking data, or any kind of tracks of moving objects.
R
4
star
7

localTesting

Code related to the paper "Local Fit Evaluation of Structural Equation Models Using Graphical Criteria" by @felixthoemmes, @yrosseel, @jtextor
R
3
star
8

trialMinRand

Imbalance-minimizing adaptive randomisation for clinical trials. R package.
R
3
star
9

libdagitty

JavaScript library for causal inference in graphical models
JavaScript
2
star
10

tcr-self-reactivity

Code for analysis of weakly or strongly self-reactive T cells
Python
1
star
11

cpmjs

CPM implementation in pure javascript (Node module)
JavaScript
1
star
12

tiltools

R package containing miscellaneous utility functions, mainly for data visualization.
R
1
star
13

cd5-scrna

Single-cell RNA sequencing analysis of naive T cells correlated to CD5 expression
R
1
star
14

tcr-segregation

Analysis code for a T cell receptor sequencing paper.
R
1
star
15

change-scores

Simulations showing inferential biases that can arise from using change scores
R
1
star
16

migration

Code related to immune cell migration research
C++
1
star
17

negsel

String-based models of thymic selection in the immune system.
Java
1
star
18

2020-ctl-killing

Code for Manuscript "Cancer cell elimination by cytotoxic T cell cooperation and additive damage"
R
1
star
19

bayesianNetworks

Repository of the Bayesian Networks course at RU
R
1
star
20

noseph

1
star
21

tracking

Simple code for tracking cells
MATLAB
1
star
22

artistoo-models

Collection of simulation models implemented using the artistoo framework.
HTML
1
star