jtextor/artistoo-models

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jtextor/artistoo-models

jtextor

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Collection of simulation models implemented using the artistoo framework.

dagitty

Graphical analysis of structural causal models / graphical causal models.

epitope-prediction

R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.

cpm

Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.

immunet

insilico-trials

Simulation models for immunotherapy and chemotherapy trials

limmsim

MotilityLab

R package for analyzing cell tracking data, or any kind of tracks of moving objects.

localTesting

Code related to the paper "Local Fit Evaluation of Structural Equation Models Using Graphical Criteria" by @felixthoemmes, @yrosseel, @jtextor

trialMinRand

Imbalance-minimizing adaptive randomisation for clinical trials. R package.

libdagitty

JavaScript library for causal inference in graphical models

tcr-self-reactivity

Code for analysis of weakly or strongly self-reactive T cells

cpmjs

CPM implementation in pure javascript (Node module)

tiltools

R package containing miscellaneous utility functions, mainly for data visualization.

cd5-scrna

Single-cell RNA sequencing analysis of naive T cells correlated to CD5 expression

tcr-segregation

Analysis code for a T cell receptor sequencing paper.

change-scores

Simulations showing inferential biases that can arise from using change scores

migration

Code related to immune cell migration research

negsel

String-based models of thymic selection in the immune system.

2020-ctl-killing

Code for Manuscript "Cancer cell elimination by cytotoxic T cell cooperation and additive damage"

bayesianNetworks

Repository of the Bayesian Networks course at RU

noseph

tracking

Simple code for tracking cells