jtextor/MotilityLab

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Rank 3,304,323 (Top 66 %)
Language
R
Created about 8 years ago
Updated over 5 years ago

jtextor/MotilityLab

jtextor

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R package for analyzing cell tracking data, or any kind of tracks of moving objects.

dagitty

Graphical analysis of structural causal models / graphical causal models.

epitope-prediction

R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.

cpm

Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.

immunet

insilico-trials

Simulation models for immunotherapy and chemotherapy trials

limmsim

localTesting

Code related to the paper "Local Fit Evaluation of Structural Equation Models Using Graphical Criteria" by @felixthoemmes, @yrosseel, @jtextor

trialMinRand

Imbalance-minimizing adaptive randomisation for clinical trials. R package.

libdagitty

JavaScript library for causal inference in graphical models

tcr-self-reactivity

Code for analysis of weakly or strongly self-reactive T cells

cpmjs

CPM implementation in pure javascript (Node module)

tiltools

R package containing miscellaneous utility functions, mainly for data visualization.

cd5-scrna

Single-cell RNA sequencing analysis of naive T cells correlated to CD5 expression

tcr-segregation

Analysis code for a T cell receptor sequencing paper.

change-scores

Simulations showing inferential biases that can arise from using change scores

migration

Code related to immune cell migration research

negsel

String-based models of thymic selection in the immune system.

2020-ctl-killing

Code for Manuscript "Cancer cell elimination by cytotoxic T cell cooperation and additive damage"

bayesianNetworks

Repository of the Bayesian Networks course at RU

noseph

tracking

Simple code for tracking cells

artistoo-models

Collection of simulation models implemented using the artistoo framework.