jsta/r-docker-tutorial

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jsta/r-docker-tutorial

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A docker tutorial for reproducible research

r-docker-tutorial

A docker tutorial for reproducible research.

This is an introduction to Docker designed for participants with knowledge about R and RStudio. The introduction is intended to be helping people who need Docker for a project. We first explain what Docker is and why it is useful. Then we go into the the details on how to use it for a reproducible transportable project.

Lessons:

Links

Credit

Formerly an rOpenSci project started at the 2016 Unconference. Credit to all the contributors!

nhdR

R interface to the National Hydrography Dataset 💧

limnology_models_data

Models and datasets for Limnology

ipdw

Interpolation by Inverse Path Distance Weighting 🌊

sfpolymorph

Calculate polygon shape metrics

wql

Water Quality - Lite : Exploring Water Quality Monitoring Data

wikilake

Scrape lake metadata tables from Wikipedia 🏞

gshhg

A Global Self-consistent, Hierarchical, High-resolution Geography Database

gssurgo

Python package enabling an open source gSSURGO workflow

looseleaf

Research compendium template for tracking, linking, and sharing data explorations

streamnet

Morphology analysis of stream networks 🍃

dams

R interface to the United States National Inventory of Dams

externalrdata

Template for R packages that fetch, cache, and serve data from external sources

cond2sal_shiny

Shiny app to convert conductivity to salinity

openbugs

Source code mirror for openbugs

nesRdata

R package to fetch, cache, and serve the National Eutrophication Survey

nlaR

R interface to the National Lakes Assessment

nsws

National Surface Water Survey Package

nml

An R package for parsing Fortran namelist files 🎩

zoteroscripts

Recipes for managing your Zotero library with `pyzotero`

natcap-invest-docker

Docker wrapper around NatCap's InVEST

sparrow_1992-phosphorus

SPAtially Referenced Regression on Watershed attributes

glwdr

R client for the Global Lakes and Wetlands Database

jsta

An automated build system for generating a release and blog list for Github profiles

nlmpy

A Python package to create neutral landscape models [pip mirror]

rv

Simulation-Based Random Variable Objects

DataflowR

Data handling and interpolation for underway water quality monitoring

limnojobs

Twitter feed of newly posted jobs in limnology

wasp

Water Quality Analysis Simulation Program

imagemagick_cheatsheet

Cheatsheet for the command line image editing program Imagemagick

BAYEX

Spatiotemporal Bayesian hierarchical modeling of extremes with max-stable processes

science_cheatsheet

What is Science?

mapview.addin

RStudio addin for viewing Spatial objects

glatos

Mirror of the glatos R package

pyffp

A simple two-dimensional parameterisation for Flux Footprint Prediction (FFP)

rinvest

R wrapper for Python invest

glatos-spatial_workshop_materials

GLATOS - Working with Geospatial Data

wayback

R interface to the WayBack Machine API 🕐🔙

aslo_tweets

analyzing tweets about ASLO 2018

paper_template

Minimal Makefile-driven paper template

autodatadoc

Example of automated data documentation for R packages

NEON-python-Spatial-Vector

Jupyter Notebook

MANAGE

Measured Annual Nutrient loads from AGricultural Environments

learnglm

Resources to learn the General Lake Model

gh_cran_portfolio

Github CRAN Portfolio Dashboard

dciR

Calculate Directional Connectivity Index without Matlab

clark2007

Code examples from Models for Ecological Data

gnis

USGS Geographic Names Information System (GNIS)

realsat-r

Reservoir and Lake Surface Area Timeseries-Reservoirs

pysparrow

Forked from: code.google.com/p/pysparrow

neon_lakes

Source for NEON lakes blog post

icesat

ATLAS/ICESat-2 L3A Inland Water Surface Height

nesR

Scrape Data from the National Eutrophication Survey

schemeR

Visualize SQLite structure with R :neckbeard:

irlgraph

Irregular Landscape Graphs to generate accumulated cost surfaces

GLM_docker

Building the General Lake Model (GLM) with Docker

nes_connectivity_p

Does Freshwater Connectivity Influence Phosphorus Retention in Lakes?

AQUASIM

Computer Program for the Identification and Simulation of Aquatic Systems

HydroPy

Unofficial mirror of the HydroPy global hydrological model from Zenodo

SADIE

Spatial Analysis by Distance IndicEs

makefile-recipes

Examples of Makefile driven pipelines for computational research

swatr

A multi-OS implementation of the TAMU SWAT model

dissertation

Spatial Patterning of Lake Nutrients and Morphometry at Macroscales: Importance of Regional Factors and Aquatic-Terrestrial Linkages

ProgrammingNotes

Notes and Cheatsheets on Programming Languages and Web Dev Frameworks

glmgui

GUI for working with the GLM lake model.