josephhughes/Sequence-manipulation

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Perl
Created about 13 years ago
Updated about 1 year ago

josephhughes/Sequence-manipulation

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A range of different perl scripts for manipulating sequences, conducting alignments, consensus sequences, changing formats

DiversiTools

Tool for analysing viral diversity from High Throughput Sequencing

btctools

Beyond the consensus NGS tools

ViCTree

An automated framework to aid taxonomic classification of viruses

viral-bioinformatics-training

Material for the GECO viral bioinformatics training, Manila, Philippines

PrepPhyloViz

preparing files for phyloviz software

Tutorials

Different bioinformatic tutorials for analysing sequence data and other type of bioinformatic data

TCRclust

A collection of scripts used for tracking T-cell expansions using HTS

GenRefSeq

This pipeline and scripts allows for selected sequences to be collected, which span the virus/genus diversity for a given taxonomic ID, which in turn can be used in reference-based assembly projects