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veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomescompositional
Compositional data analysis in Pythonprojects
Various research projectsclairvoyance
AutoML simultaneous bayesian hyperparameter optimization and feature selectionpykofamsearch
Fast implementation of KofamScan optimized for high-memory systems using PyHmmerhive_networkx
Hive plots in Pythonfastq_preprocessor
Fastq preprocessor with optional contamination removal. Supports short and long reads.pyhmmsearch
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmerensemble_networkx
Ensemble networks in Pythongenopype
Architecture for creating bash pipelines, in particular, for bioinformaticssoothsayer_utils
Utility functions for Soothsayernif_finder
NMD Inducible Feature Finderpipelines
Automated informatics pipelines with consistent directory structuresgenomic_neighborhood
Versatile command-line tool designed to create publication quality genomic neighborhood plots built on top of DnaFeaturesViewerLove Open Source and this site? Check out how you can help us