jolespin/pyhmmsearch

Stars
4
Rank 3,287,457 (Top 66 %)
Language
Python
License
MIT License
Created 5 months ago
Updated 4 months ago

jolespin/pyhmmsearch

jolespin

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmer

veba

A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

compositional

Compositional data analysis in Python

soothsayer

High-level analysis package for (bio-)informatics

projects

Various research projects

Jupyter Notebook

clairvoyance

AutoML simultaneous bayesian hyperparameter optimization and feature selection

pykofamsearch

Fast implementation of KofamScan optimized for high-memory systems using PyHmmer

hive_networkx

Hive plots in Python

fastq_preprocessor

Fastq preprocessor with optional contamination removal. Supports short and long reads.

ensemble_networkx

Ensemble networks in Python

genopype

Architecture for creating bash pipelines, in particular, for bioinformatics

soothsayer_utils

Utility functions for Soothsayer

nif_finder

NMD Inducible Feature Finder

Jupyter Notebook

pipelines

Automated informatics pipelines with consistent directory structures

genomic_neighborhood

Versatile command-line tool designed to create publication quality genomic neighborhood plots built on top of DnaFeaturesViewer