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veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomescompositional
Compositional data analysis in Pythonsoothsayer
High-level analysis package for (bio-)informaticsprojects
Various research projectsclairvoyance
AutoML simultaneous bayesian hyperparameter optimization and feature selectionpykofamsearch
Fast implementation of KofamScan optimized for high-memory systems using PyHmmerhive_networkx
Hive plots in Pythonfastq_preprocessor
Fastq preprocessor with optional contamination removal. Supports short and long reads.pyhmmsearch
Fast implementation of HMMSEARCH optimized for high-memory systems using PyHmmerensemble_networkx
Ensemble networks in Pythongenopype
Architecture for creating bash pipelines, in particular, for bioinformaticssoothsayer_utils
Utility functions for Soothsayernif_finder
NMD Inducible Feature Finderpipelines
Automated informatics pipelines with consistent directory structuresLove Open Source and this site? Check out how you can help us