johandahlberg/curiouscrows

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Python
License
MIT License
Created over 8 years ago
Updated about 8 years ago

johandahlberg/curiouscrows

johandahlberg

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Team repository for the Curious Crows for Hack4Sweden 2016

awesome-10x-genomics

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

piper

A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (make sure you fork from there)

ansible_spark_openstack

Instructions and Ansible playbooks for deploying a Spark stand-alone cluster on OpenStack

polymerase

Data -> DNA -> Data

Splitter

Scala program for splitting files of some common bioinformatics formats (right now fastq.gz and bam)

contAdamination

Hacking away on bloom filters and adam...

vagrant-puppet-slurm

A playground for testing setting up a slurm cluster (for testing purposes only).

Scripts

My collection of (mostly) bioinformatics related scripts

BestPracticeSlides

Repo for the code used in the MolMed TechTalk about best practices in scientific computing.

reedsolomon-scala

Reed-Solomon Encoding in Scala

PiperWorkshop

SnpSeqPipeline

Variant calling pipeline for the SNP&SEQ Technology Platform at Uppsala University

arteria-incubation

Work-in-progress for the upcoming new and improved Arteria packs.