joey711/biom

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R
Created about 11 years ago
Updated over 3 years ago

joey711/biom

joey711

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Development version of the biom package for R

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.

testpkg

A dummy R package for testing aspects of R development

biomformat

Biom file format support in R/Bioconductor, vers. 1.x (JSON) and 2.x (HDF5) https://bioconductor.org/packages/release/bioc/html/biomformat.html

phyloseq-demo

Extended demonstrations of the phyloseq package

waste-not-supplemental

Supplemental Materials for the "Waste Not, Want Not..." Article in PLoS Computational Biology

dada2docker

Docker build instructions for DADA2 and related functionality

phyloseq-extensions

Extensions for the phyloseq package for R

animate.phyloseq

Animation addon tool for phyloseq package

joey711.github.com

Official GitHub central page for joey711

biomformat-oldfork

This is deprecated. Please post issues at the BioC-synced joey711/biomformat

phyloseq-article-2013

The complete source for reproducing our 2013 PLoS ONE article describing the phyloseq package

biomformat0

Support for the biom file format in R/Bioconductor, versions 1.x (JSON) as well as 2.x (HDF5)