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Stars1
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LanguagePython
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Created over 8 years ago
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skan
Python module to analyse skeleton (thin object) imagesscipy-japan-2019
NumPy tutorial given at SciPy Japan 2019ray
Automatic segmentation of electron microscopy volumesllc-tools
Decorators to make it easier to write SciPy LowLevelCallablesaffinder
Quickly find the affine matrix mapping one image to another using manual correspondence points annotationstreaming-talk
Resources for a talk about streaming data analysis in Pythonnapariboard-proto
Prototype implementation of napari-integrated CNN training viewerzarpaint
Paint segmentations directly to on-disk/remote zarr arraysjax-workshop
h5cat
Quick preview of HDF5 files on the command linemysquishy
Recompress zarr chunks in-placegit-tutorial
Notes for a workshop on using git and githublma-2021-bioimage-analysis-python
"Bioimage analysis in Python" workshop at LMA2021using-python-for-science
The essential guide to using Python for scientistsfunctional-programming-in-python
Functional programming in Python talk at Linux Conf Australia 2016ipython-config
A config file to keep up with the endless updates from the iPython team.viridis
A tree library for Pythonhalfway-to-i2k-skimage-napari
Repo for halfway to i2k workshop: Fundamentals of image analysis in Python with scikit-image, napari, and friendslesion
Quantify recovery of spinal cord lesions in zebrafish embryosblob-explorer
Cluster image snippets in an interactive scatterplot and view themi2k-skimage-napari
Repository for the scikit-image, napari, & friends tutorial at I2K 2020mpl-volume-viewer
Simple matplotlib-based volume (3D image) viewerpia-tracking
Scripts to work with Pia Larsson's platelet tracking datanapari-midi
Control napari with a USB midi controllerscikit-image-book
platelet-unet-watershed
skan-talk-scipy-2019
Materials for my talk at SciPy 2019aspp2015
Lecture materials for ASPP 2015 in Munichsony-digital-paperpile
A synchronisation tool between Paperpile's Google Drive structure and Sony Digital Paper using Box's WebDAV.fiji-python
Template project to make Python command-line tools to be run by Fijinumpy-skimage-tutorial
A quick tutorial of NumPy and scikit-image for the COMBINE Python workshop, 2014-11-27explode-view
Show exploded view of an image.cellom2tif
Python command line interface to convert Cellomics .C01 files to TIFF.jni.github.io
The home page of Juan Nunez-Iglesiasperformance-tests
A collection of benchmarks to answer Python (initially) performance questionsgel
GEL superpixels: iterative geodesic expansion of labels and recenteringosx-prefs
Command line OSX preferences setup.skeletons
Tools to explore skeletonisation methods in 3Daspp2017-numpy-solutions
Solutions for the NumPy tutorial in ASPP 2017aspp-2017-cython-solutions
Solutions for the ASPP 2017 Cython coursestatutes
Statistical utilitiesscipy-japan-2020
Repo for SciPy Japan 2020 talkaspp-2017-cython
Lecture materials for ASPP 2017 in Nikiti, Greecebetamax
Estimating optimal sampling strategies for high-throughput screensscientific-programming-in-Python
How to use Python for scientific workbashrc
My .bashrc filemy-documents
A haphazard collection of writing.skan-scripts
Some scripts and data for skeleton analysis with Pythongaest
Genetic algorithms to clutser expressed sequence tagssynapse-geometry
Examine features of synapse geometry in EM segmentation dataunfold-embryo
Unfold an image along an anterior-posterior axis defined by fluorescenceaspp2017-numpy
Lecture materials for ASPP 2017 in Nikiti, GreeceLove Open Source and this site? Check out how you can help us
