jguhlin/beaker

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Created about 4 years ago
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jguhlin/beaker

jguhlin

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minimap2-rs

Rust bindings to minimap2 library

sfasta

ODG

ODG: Omics Database Generator - Integration toolkit for -omics data

lostruct-py

Jupyter Notebook

nanopore-basecaller-training

Experiments on training the nanopore basecaller (bonito -> guppy is the goal)

syncmers

Library for finding syncmers from &[u8] in rust

biotools

Bio* library for Clojure, with a focus on reducers and parallelism support

useful-nextflow-patterns

Useful nextflow patterns and examples

Conservation_Genomics_The_Book

Book for Practical aspects of Conservation Genomics

stonefly_anno

sbrowser

explode_orfs

fasta-shuffler

fffx

Yet another fasta/x/q file parser

DeepVariantPipeline

fffx-tools

Simple utils for cleaning up FASTX files

everypulse

scikiwi

projh

CLI project tracking

kmer-generator

ludum-dare-47-base

oracular

miniprot-rs

Miniprot Rust Bindings

bptree

Basic B+ Tree for use in SFASTA (and possibly elsewhere)

acc2tax

singularity-containers

awakeningbw

deezmux

Demultiplex Illumina Reads files by Header barcode

kmer-hasher

Benchmarking various kmer-hashing algorithms

ffforf

genome-annotation-guide

repeat-element-analysis

Commands, Scripts, and custom Programs used to analyze repeat elements in a forthcoming publication