jfass/compass

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8
Rank 2,091,872 (Top 42 %)
Language
Perl
Created almost 12 years ago
Updated over 10 years ago

jfass/compass

jfass

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Perl / R scripts to COMPare a DNA sequence ASSembly to a trusted reference sequence

apc

(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

PBcR-testing

framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly

seqHelpers

various Perl, Python, and other scripts to help manipulate high throughput sequence data