jfass/PBcR-testing

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Created over 11 years ago
Updated over 11 years ago

jfass/PBcR-testing

jfass

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framework for testing various strategies related to correction of PacBio reads (via Illumina reads) and subsequent use in assembly

apc

(a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join

compass

Perl / R scripts to COMPare a DNA sequence ASSembly to a trusted reference sequence

seqHelpers

various Perl, Python, and other scripts to help manipulate high throughput sequence data