jefferis/gold_trainingsubset_79_all

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jefferis/gold_trainingsubset_79_all

jefferis

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BigNeuron gold training set + initial automated reconstructions.

nabor

R package wrapping libnabo: fast K Nearest Neighbor search for low dimensions

fiji-cmtk-gui

Simple GUI frontend for CMTK image registration tools in Fiji/ImageJ

gphys

R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro

readobj

R package providing fast reader for Wavefront OBJ 3D scene files

cmtk

Unofficial git clone of Computational Morphometry Toolkit (CMTK)

IgorR

R package to load Igor Pro waves (ibw) and experiment files (pxp) in R

AnalysisSuite

R Neuron Analysis Suite provides functions to read/write/analyse neuroanatomical data

readbitmap

R package to identify and read bitmap images

pic2nifti

Simple conversion from Biorad PIC to nifti for use with DTI-TK quicklook plugin

EURef2Petition

Data and code to analyses the EU 2nd referendum petition (http://petition.parliament.uk/petitions/131215)

vfbr

R Package to Access the Virtual Fly Brain project API

RANN2

Fast Nearest Neighbour Search (Rcpp wrapper for libANN)

AnalysisSuiteBin

These are additional perl/shell scripts that are intended to support my AnalysisSuite package

flylight

Functions for working with Janelia FlyLight confocal images

hxNrrdIO

a library for Amira 3d Visulisation Software to read/write data in the Nrrd Image format

PNVisualisationInAmira

Examples of how to visualise groups of Projection Neurons in Amira

bigneuronimperial

Some analysis associated with the BigNeuron hackathon at Imperial College Jan 2016

scanimage

read and analyse 2 photon images from ScanImage

PackageDevelopmentTaskView

[Task View]: R "PackageDevelopment" Task View

micromanager12extras

Some code built on top of the micromanager 1.2 tree that improved dc1394 support and added a LabJack driver

bmp

A simple R package to read Windows BMP format images

nm-ucl

neura

Fork of NeuRA Neural Reconstructions Algorithms

manifoldreduction

Manifold Dimension Reduction after Chigirev and Bialek

nat.ants

Bridge neuroanatomy toolbox ('nat') and 'ANTs' registration tools

PLyXSystem

A method of using python scripts to manipulate the current document in LyX.

fmfio

R package to read the 'FlyMovieFormat' (fmf) video format

rimagej

Clone of RImageJ that bridges ImageJ image processing software and R statistical environment