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singleCellSeq
Batch effects and the effective design of single-cell gene expression studiessmk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-configr-project-workflows
List of workflow tools for R projectsgit-for-science
A quick introduction to version control with Git and GitHubreproducible-research-ctv
**Archived** CRAN Task View: Reproducible Researchsinglecell-qtl
Discovery and characterization of variance QTLs in human induced pluripotent stem cellstbd
To be determined... -> TB Dissertationfucci-seq
Characterizing and inferring quantitative cell cycle phase in single-cell RNA-seq data analysisctv-project-workflows
R Task View: Project Workflowscardioqtl
workflowrBeta
The beta release of workflowrgiladlab-midway-guide
Guide to using RCC Midwayrepdoc
Package for testing workflowr featuresfilter_probes
Filter Illumina HT-12 v4 probes for presence of HapMap CEU SNPstb-suscept
Predicting susceptibility to tuberculosis based on gene expression profiling in dendritic cellsjdb-conda
Scripts, recipes, and docs for maintaining Conda packages2016-09-15-chicago
Website for 2016 Software Carpentry workshop for UChicago BSDr-intermediate-altmetrics
A 2-day workshop on intermediate-level programming with Rci4r
Demonstrate CI testing for an R packagemidway-subread-pipeline
Process RNA-seq data with Subread on RCC Midway2016-09-14-introR
Website for 2016 UChicago BSD Introduction to R Workshopblog.jdblischak.com
My blogwhereami
Visualize your current working directorycomputing-tips
Computing tips for scientistsdsc-mouthwash
Dynamic Statistical Comparisons for MOUTHWASH simulationstest-issue-templates
Temporary repo to test GitHub Issue Templatesopen-sci-template
Template for creating project website. Facilitates open science. Powered by R, knitr, and pandoc.swc-novice-r
Data files for teaching Software Carpentry novice R lessonsdc-bioc-limma
DataCamp: Differential expression analysis in R with limmaworkflowr-demo01
An example site created with workflowrr-reproducibility-challenge
Exercise on reproducible research with R2014-09-18-chicago
Software Carpentry bootcamp at University of ChicagoLove Open Source and this site? Check out how you can help us