jbloom/CoV_vs_flu_CFR

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jbloom/CoV_vs_flu_CFR

jbloom

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case fatality rates of COVI-19, 1918 influenza, seasonal influenza

SARS-CoV-2_PRJNA612766

Analysis of early Wuhan SARS-CoV-2 sequences from deleted SRA BioProject PRJNA612766

SARS2_28Dec2019_Genbank_submission

analysis of SARS-CoV-2 sequence submitted to Genbank on Dec-28-2019

Jupyter Notebook

epitopefinder

Python package for mapping epitopes to sequences

Huanan_market_samples

Analysis of SARS-CoV-2 read counts versus metagenomic content for Huanan Seafood market sequencing data from Chinese CDC

mutpath

Map mutational paths through protein sequence space

PRJNA692319_public

Analysis of Antarctica sequencing samples contaminated with SARS-CoV-2

SARS2-clade-spike-diffs

Plot spike differences among SARS-CoV-2 Pango clades

Jupyter Notebook

Omicron_clock

Molecular clock analysis on Omicron

Jupyter Notebook

SARS2-clock

Number of mutations relative to Wuhan-Hu-1 in SARS-CoV-2 clades

Jupyter Notebook

NA_Mutation_Analysis

Analysis of mutations in influenza neuraminidase

SARS-CoV-2_Shen_et_al

Jupyter Notebook

jbloom.github.com

documentation pages

Huanan_market_samples_addtl_analysis

additional analysis of metagenomic samples from the Huanan Seafood Market