jbkinney/16_titeseq

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Python
Created about 8 years ago
Updated about 7 years ago

jbkinney/16_titeseq

jbkinney

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Processed data and analysis code for Adams et al., 2016 bioRxiv

logomaker

Software for the visualization of sequence-function relationships

Jupyter Notebook

mavenn

MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect

Jupyter Notebook

suftware

SUFTware: Statistics Using Field Theory

Jupyter Notebook

18_urp

Excercises for the 2018 URP programming workshop

Jupyter Notebook

14_crispr

Code and processed data reported in Shi et al. (2015) Nat. Biotechnol. [in press]

14_maxent

Code for "Unification of Field Theory and Maximum Entropy Methods for Learning Probability Densities" (2014) by Justin B. Kinney, available at http://arxiv.org/abs/1411.5371

15_splicing

Jupyter Notebook

13_deft

Code for "Rapid and Rapid and deterministic estimation of probability densities using scale-free field theories" arXiv:1312.6661 [physics.data-an]

24e_urp

Code for the 2024 CSHL URP Python Programming Course

Jupyter Notebook

22e_qbbootcamp

Materials for the 2022 QB Bootcamp at Cold Spring Harbor Laboratory

Jupyter Notebook

19_mlcb

Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

Jupyter Notebook

15_sordella

17_qbbootcamp

Exercises for the 2017 WSBS QB Bootcamp

Jupyter Notebook

23e_qbbootcamp

2023 Quantitative Biology Bootcamp at Cold Spring Harbor Laboratory

Jupyter Notebook