jandot/biorake

Stars
13
Rank 1,512,713 (Top 30 %)
Language
Ruby
Created over 16 years ago
Updated almost 16 years ago

jandot/biorake

jandot

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An extension to rake that can be used to build database-backed workflows

ruby-ensembl-api

A ruby API to the Ensembl database

bioclojure

Seed of a bioclojure library

bio-graphics

Bio::Graphics is a ruby library for visualizing annotations on chromosomes

parp

Processing Abnormal Read-Pairs

ruby-ucsc-api

A ruby API to the UCSC database

machine-learning-in-action

Clojure implementation of examples in Machine Learning in Action

locustree

Ruby library to search genomic loci

fitviz

Fitbit visualizations

sprolog

Simple Project Logger

c2-samples

Examples for C2 (clojure implementation of D3)

stanford-ml-class

Code for Stanford Machine Learning class

quil-workflow

Testing out quil (clojure) for dataviz

vizbi2012_d3

Code from D3 workshop at vizbi2012

ruby-class-extensions

Commonly used class extensions

CourseProgrammingEvolutionaryBiology

scrub-pubmed-email

Tool to extract email address of corresponding authors on papers based on pubmed search

enfarmer

Extension of the Enumerable class to allow parallelization of jobs over a farm

playing-with-paperjs

gpsviz

Visualization of GPS logging data

Incanter-Cookbook

Translation of R Cookbook in Incanter

SNiPER

Workflow for SNP analysis of next-generation sequencing reads

jandot.github.io

Saaientist blog 2.0

aerts-exercises-leipzig

Database and visualization exercises for Leipzig course "Programming for Evolutionary Biology"

git-prompt

Add coloured name of git branch to bash prompt

euler

Solutions to the Project Euler problems (http://projecteuler.net)

script_summoner

Generating template ruby scripts with documentation and argument parsing.

bavs

Bioinformatics and visualization scripts

structvarview

Structural Variation Viewer