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ivadomed
Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.model_seg_sci
Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCImultimodal-registration
Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic registration model may later be used in IvadoMed’s pipeline.utilities
Repository containing utility scripts for handling various aspects in a DL model training pipelinemodel-spinal-rootlets
Deep-learning based segmentation of the spinal nerve rootletscanproco
Code for preprocessing the CanProCo brain and spinal cord datasetms-lesion-agnostic
Deep Learning contrasts "agnostic" tool for MS lesion segmentation in the spinal cordmodel_seg_gm-wm_t2star_7t_unet2d-multiclass
A deep learning model that allows robust SC/GM multi-class segmentation based on ultra-high resolution 7T T2*-w MR imagesmodel-seg-dcm
Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)model_seg_mouse-sc_wm-gm_t1
White and grey matter segmentation on T1-weighted exvivo mouse spinal cordmodel_seg_ms_mp2rage
Model repository for MS lesion segmentation on MP2RAGE data from University of Baselmodel_seg_csf_epi
Model repository for spinal cord csf segmentation on EPI datamodel_sc_centerline
Repository for automated spinal cord centerline detection using deep learningMEEG-Brainstorm
Repository for training MEEG datasets with the ivadomed framework in Brainstormmodel_find_disc_t2
training-nnunet
nnU-Net quick-start guidepipeline-ms-lesion
Pre-processing pipeline for multi-contrast spinal MS lesion segmentationarticle-softseg
data-testing
Light-weighted data for testing/tutorialmodel_seg_sctumor-edema-cavity_t2-t1_unet3d-multichannel
Model to segment spinal cord tumor, edema, and cavity using as input T2w and gadolinium-enhanced T1w MRI scans.findcord_tumor
Counterfactual_synthesis_for_lesion_segmentation
Bidsification
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