isovic/minialign

Stars
10
Rank 1,807,489 (Top 36 %)
Language
C++
License
MIT License
Created about 8 years ago
Updated over 7 years ago

isovic/minialign

isovic

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Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

graphmap

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

raptor

Graph-based mapping of long sequences, noisy or HiFi.

wavelet-image-compression

Simple FPGA-based Wavelet Image Compression

aligned_vector

An STL-like std::vector implementation which internally aligns the array to a desired number of bytes. Intended for e.g. SIMD purposes.

cigargen

Simple DP implementation of Needleman-Wunsch for generating CIGAR strings for sequence alignments.

aracon

Assembly with RApid CONsensus from raw noisy long reads

consensus_from_mpileup

Scripts to compute simple consensus (SNPs, insertions, deletions) from mpileup by majority vote.

samscripts

seqlib

A codebase for sequence analysis projects. Highly experimental and in development.

argparser

Library for parsing command line arguments. Allows short and long arg names, specifying parameter groups and default values.

evalue

E-value calculation with predefined BLAST parameters.

graphmap-reproduce

Scripts for testing and validating GraphMap.