isglobal-brge/radiomics

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isglobal-brge/radiomics

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This repo includes some tools, resources and databases related to CT images (lung). This work was done by Iker Gonzalez (https://github.com/ikerto) during his internship in summer 2021. It is being updated by other students.

methylclock

DNA methylation-based clocks

SNPassoc

Genetic association studies

rexposome

Bioconductor package to characterize, analyze and integrate exposome with omic and disease data

exposomeShiny

Toolbox for exposome data analysis

R-GADA

R implementation of GADA software

MADloy

R package to detect mosaic loss of Y events in SNP array and NGS data

TeachingMaterials

ShinyDataSHIELD

Shiny app for DataSHILED omic data analyses

dsOmicsClient

dsOmic client site base functions

book_omic_association

Material of the book "Omic association studies with R/Bioconductor"

CTDquerier

R package to make queries to Comparative Toxicogenomics Database and download the obtained results.

dsExposomeClient

DataSHIELD client functions for exposome data analyses

brge_data_large

Compendium of packages used in BRGE group

dsOmics

Functions to perform omic data analyses using DataShield

EASIER

Tools for methylation data analysis

svdParallel

Functions to SVD using parallel algorithms

dsOmics-workshop

short_course_omic_R

Short course on omic data analysis with R

BigDataStatMeth

Statistical Methods and Algorithms for Big Data stored as DelayedArray

MAD

Mosaic Alteration Detector

Master_Bioinformatics

Additional Material for Master in Bioinformatics and Omics Data Analysis

ExonCountData

Exon counts from TCGA

mgcca

Generalized Canonical Correlation Analysis with possible missing data

invClust

Cluster inversion polymorphism from SNP data

resource_bookdown

Bookdown for "Orchestrating Big Data Analyses for Different Resources using R and DataSHIELD"

ShinyDataSHIELD_bookdown

dsML

biomarkers_multiple_tables

5-days course introducing conditional and multivariate methods to analyze one or multiple tables in disease association studies

MultiDataSet

Bioconductor package to encapsulate multiple datasets (including BioC omic data types)

curso_Jamovi

Curso análisis estadístico con Jamovi aplicado a Enfermería y CAFE (8 horas)

Curso_R_avanzado

PrivateTeachingMaterials

Teaching Material for privated courses

exposome_bookdown

Exposome data analysis using R and Bioconductor packages along with a Shiny app

ExposomeHub

Repository for Exposome Hub at ISGlobal

lambda

MEAL

Methylation and Expression AnaLysis

CNVassoc

Analysis of CNVs incorporating uncertainty

dsVert

master_thesis

Repository of R/Bioc code of master thesis

imputeInversion

Scripts to impute inversion regions of interest

scoreInvHap

Inversion haplotype classifier using SNP data