iobis/Project-team-Genetic-Data iobis/Project-team-Genetic-Data

  • Stars
    star
    10
  • Rank 1,775,625 (Top 36 %)
  • Language
  • Created over 3 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
iobis/Project-team-Genetic-Data
github

iobis

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Developing guidelines for adding sequence data to OBIS

More Repositories

1

robis

R client for the OBIS API
R
29
star
2

obistools

Tools for data enhancement and quality control
R
18
star
3

pyobis

OBIS Python client
Jupyter Notebook
14
star
4

obis-network-datasets

Workflow for processing OBIS tagged datasets in GBIF
Python
9
star
5

PacMAN-pipeline

Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project
R
9
star
6

obis-qc

OBIS QC checks
Python
9
star
7

dataset-edna

eDNA dataset demonstrator
Jupyter Notebook
7
star
8

pyworms

Python client for the WoRMS REST service
Python
6
star
9

manual

The OBIS manual
HTML
5
star
10

obis-issues

Repository for all OBIS related issues and feature requests
4
star
11

dataqueue

On deck datasets on their way into an OBIS node
3
star
12

vocab

3
star
13

non-matching-names

Workflow to build non matching names list
Python
2
star
14

env-data

ENV-DATA related issues and documentation
2
star
15

worms

R package for consuming the WoRMS webservice
R
2
star
16

ebsa

R code to calculate biodiversity indices and other metrics in support of the CBD EBSA process
R
2
star
17

gbif-marine

Python
2
star
18

protectedseas-statistics

R
2
star
19

mgnify-extract

Jupyter Notebook
1
star
20

papers

OBIS papers from Google Scholar
1
star
21

dwca-generator

Generation of Darwin Core Archives from OBIS data
Python
1
star
22

geobon-webinar

Code for the GEO BON Open Science Conference 2020 talk
R
1
star
23

woa2-fish

WOA2 fish biodiversity
R
1
star
24

ebsa_np

EBSA statistics using R
R
1
star
25

dataproducts

Dataproducts using OBIS data
R
1
star
26

quality-taskteam

OBIS data quality task team
1
star
27

edna-tracker-data

GitHub action for transforming eDNA samples metadata from PlutoF
Python
1
star
28

iwg-products

Repository for the Intersessional Working Group on data products.
1
star
29

otga-course-review

Issues related to OBIS courses on OTGA
1
star
30

pacman-pipeline-training

Training materials for the PacMAN bioinformatics pipeline
HTML
1
star
31

mapper

Mapper prototype
JavaScript
1
star
32

smalldata

JavaScript
1
star
33

mof-viewer

JavaScript
1
star
34

sdmcourse

Training material for the SDM course
HTML
1
star
35

pacman-data-entry

Data submission template for the Pacific islands Marine bioinvasions Alert Network (PacMAN) project
1
star
36

tracking-data

Repository for the OBIS Event Data Workshop on animal tagging and tracking data
HTML
1
star
37

mwhs-data-mobilization

Biodiversity data mobilization for marine World Heritage sites.
HTML
1
star
38

dwca-processor

Parses and denormalizes Darwin Core Archives
Python
1
star
39

demo-polar

Demo of intersecting OBIS records and arctic or antarctic geometries.
R
1
star
40

paper-hab-trends

1
star
41

sg-12-training

HTML
1
star