iobis/Project-team-Genetic-Data

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iobis/Project-team-Genetic-Data

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Developing guidelines for adding sequence data to OBIS

robis

R client for the OBIS API

obistools

Tools for data enhancement and quality control

pyobis

OBIS Python client

Jupyter Notebook

obis-network-datasets

Workflow for processing OBIS tagged datasets in GBIF

PacMAN-pipeline

Bioinformatics pipeline for the analysis of amplicon sequencing data of eDNA samples from the PacMAN project

obis-qc

dataset-edna

eDNA dataset demonstrator

Jupyter Notebook

pyworms

Python client for the WoRMS REST service

obis-issues

Repository for all OBIS related issues and feature requests

manual

The OBIS manual

dataqueue

On deck datasets on their way into an OBIS node

vocab

non-matching-names

Workflow to build non matching names list

env-data

ENV-DATA related issues and documentation

ebsa

R code to calculate biodiversity indices and other metrics in support of the CBD EBSA process

worms

R package for consuming the WoRMS webservice

gbif-marine

protectedseas-statistics

mgnify-extract

Jupyter Notebook

smalldata

papers

OBIS papers from Google Scholar

dwca-generator

Generation of Darwin Core Archives from OBIS data

geobon-webinar

Code for the GEO BON Open Science Conference 2020 talk

woa2-fish

WOA2 fish biodiversity

ebsa_np

EBSA statistics using R

dataproducts

Dataproducts using OBIS data

quality-taskteam

OBIS data quality task team

edna-tracker-data

GitHub action for transforming eDNA samples metadata from PlutoF

iwg-products

Repository for the Intersessional Working Group on data products.

pacman-pipeline-training

Training materials for the PacMAN bioinformatics pipeline

mapper

Mapper prototype

otga-course-review

Issues related to OBIS courses on OTGA

sdmcourse

Training material for the SDM course

mof-viewer

pacman-data-entry

Data submission template for the Pacific islands Marine bioinvasions Alert Network (PacMAN) project

tracking-data

Repository for the OBIS Event Data Workshop on animal tagging and tracking data

mwhs-data-mobilization

Biodiversity data mobilization for marine World Heritage sites.

dwca-processor

Parses and denormalizes Darwin Core Archives

demo-polar

Demo of intersecting OBIS records and arctic or antarctic geometries.

paper-hab-trends

sg-12-training