inutano/sra-quanto

This repository has been archived on 01/Oct/2021
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Language
Ruby
License
MIT License
Created about 9 years ago
Updated about 3 years ago

inutano/sra-quanto

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Summary of quantitative sequence information of the Sequence Read Archive.

chip-atlas

ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser

pfastq-dump

parallel-fastq-dump implementation in bash script

cwl-metrics

Accumulating container resource usage with workflow metadata

training

texts and scripts for training course

docker-ngs-tools

A catalogue of docker images for NGS data analysis tools

sra_metadata_toolkit

make it simple to use SRA Metadata

sra-star-rsem

Workflows and more for RNA-seq data

cwl-metrics-client

CWL-metrics Elasticsearch client

cwl-metrics-manuscript

The source code for analysis and visualization of CWL-metrics manuscript.

Jupyter Notebook

bh14-docker-recipes

ohanami-project-manuscript

bioruby-fastqc

A ruby parser for FastQC data.

docker-misc

jq-docker

jq command dockerfile

ngseq-spec

biosample_jsonld

docker-nano-editor

docker image for nano editor

eggshausted

another zsh theme

docker-bridger

soylatte

Sequence Read Archive Metadata Search - formerly Kusarinoko

xml-to-json-docker

dockerfile to launch xml-to-json

docker-wget

sra_speedtest

benchmark for NGSeq file downloading&unarchive speed, from NCBI, EBI, and DDBJ