Discover intermine/flymine Open Source project

A friendly next-generation interface for Genomic data discovery powered by InterMine

252

bluegenes

Tutorials for the InterMine Python web client

InterMineR

R package for InterMine

intermine-ws-python-docs

Jupyter Notebook

internships

InterMine GSoC informational mini-site for gsoc mentors and students

JavaScript, Cascading Style Sheet Content Delivery Network

CDN

Dynamic Result Table Library

im-tables

InterMine Generic WebService Client Library

imjs

List of InterMine training workshops and links to repos / materials

training-workshops

intermine-registry

Registry to store and browse all known instances of InterMine. Developed during GSoC 2017 by Leonardo Kuffo

InterMine Client library in Python

intermine-ws-python

Portal for training resources for InterMine.

training-portal

Project to develop Neo4j as the backing store for InterMine

neo4j

Repo for ideas and community discussions about InterMine-related outreach and communities

outreach

generator-bluegenes-tool

Scaffold generator for BlueGenes tools

Retired. Visit BlueGenes instead

bluegenes-old

InterMine's new homepage as of 2017

intermine-homepage-2017

Documentation for the InterMine project

im-docs

clojurescript library to display and manipulate intermine query results on a webpage

im-tables-3

An example InterMine - for demoing and testing

biotestmine

Shell

intermine-python-ws-demo

A demo webapp using InterMine web services to query model organism data.

Visualization for BlueGenes of tissue expression

bluegenes-tissue-expression-visualizer

similarity

a library to validate biological data formats

biovalidator

neo4j-benchmark

Repo to handle docker orchestration in the cloud

intermine_compose

Ideas for improvement in ux-ui

docker-intermine-gradle

Docker for InterMine

Shell

bluegenes-ux-ideas

MineViewer

A Perl webapp for viewing data in InterMine datawarehouses

Documentation for using an InterMine webapp.

intermine-user-docs

intermine-authorization-server

A little app to spin up local containers in which to build an InterMine

intermine_boot

Archive of InterMine Community Call agendas and notes

community-call-archives

intermine_cloud

repo for cloud infrastructure

imcljs

A collection of paper diagrams, presentations, sketches, Photoshop designs and websites for InterMine

design-materials

PostScript

RatPortal

A Web-Servicer based version of RGD portal pages

CSS

InterMine-Trac-Theme

http://intermine.org

BlueGenes' Tool API server. Used as dependency in BlueGenes but can also be used standalone.

bluegenes-tool-store

bluegenes-tool-homology

Java client for InterMine

intermine-ws-java

Widget to allow intermine gene interactions to be viewed using cytoscape.js

cytoscape-intermine

InterMine 2.0 Prototype preserving history of Steps

intermine-steps

All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts

intermine-scripts

PLpgSQL

ListBasedQueryBuilder

A query bulder based on navigating from list to list

Examples for using the InterMine Java client

intermine-ws-java-docs

bluegenes-expression-box-swarm-visualizer

a group of web services used to create an InterMine instance

intermine_configurator

camCHILDMine

A node.js reference implementation of a service for loading and rendering Report Widgets (Displayers).

intermine-report-widgets

intermine-bio-sources-old

Data parsers not in use

Adaptor for processing GMOD-RPC calls as InterMine webservice requests

GMOD-RPC-Adaptor

InterMine's GMOD-RPC modules

GMOD-RPC-InterMine

Perl

InterMOD-Logo

A logo for the InterMOD project

intermine-ws-bio-ruby

Bio Extensions for the Ruby WS client

Ruby

imjs-docs

bluegenes-tool-cytoscape

Thin wrapper around the cytoscape-intermine library to present intermine gene & protein interaction networks in bluegenes

early mockups for intermine data import wizard

wizard

flymine-bio-sources

Data sources for FlyMine

Simplify loading of JS and CSS dependencies

intermine-api-loader

Query Builder Demo with Autocompleting paths

TreeSearchAutoComplete

InterMine Web Services demos and examples through the use of imjs or widgets.

humanmine-sitemap

sitemaps for humanmine

intermine-embedding-examples

bluegenes-protein-atlas-tissue-expression-visualizer

embeddable js widget to display identifiers.org info on your page

identifiers-widget

Proof of concept for ajax-based query builder

DojoTreeBrowser

humanmine-bio-sources

Data sources for HumanMine

checks intermines on the registry for bluegenes readyness

bluegenes-mine-config-checker

bluegenes-go-term-visualizer

Fork Of Mashery's IODocs project

iodocs

CSS

open-source-graphics

micklem-lab-site

Micklem Lab site on Blað CMS

CSS

cross-repo-contributor-list

InterMineR exercises for training workshops

interminer-workshop

Jupyter Notebook

covidmine

CovidMine

Perl

facetted-query-builder

A facetted query builder.

Compare HomoloGene, OrthoDB and Panther datasets

intermine-accordb

steps-ontology-tool

Client for embedding InterMine widgets (ws_widgets)

intermine-list-widgets

InterMine apps built using Bower and Grunt

intermine-apps-c

Render DAGs in interesting ways

dagify