int-brain-lab/atlas

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Jupyter Notebook
License
MIT License
Created almost 3 years ago
Updated about 2 years ago

int-brain-lab/atlas

int-brain-lab

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Brain flatmaps generation

ibllib

IBL core shared libraries

mtscomp

Multichannel time series lossless compression in pure Python based on NumPy and zlib

iblapps

pyqt5 dependent applications for IBL sessions

iblrig

Main repository for IBL rig code

IBL-pipeline

DataJoint pipeline for IBL project

Jupyter Notebook

ONE

Open Neurophysiology Environment

paper-behavior

The International Brain Laboratory et al. (2020) A standardized and reproducible method to measure decision-making in mice. bioRxiv, 909838

Jupyter Notebook

ibl-neuropixel

Collection of tools to handle Neuropixel 1.0 and 2.0 data

paper-brain-wide-map

Code related to the brainwide map paper

analysis

Initial repo for behavioral analyses

Jupyter Notebook

iblenv

Unified environment and Issue tracker for all IBL

iblviewer

Interactive visualization tool for multiple volumes, meshes and points based on VTK. The app can be controlled with Python scripts (optionally headless), with a Qt UI & dynamic statistics or with Jupyter.

spikes_localization_registration

Spike Sorting Utilities

Jupyter Notebook

ann-rnns

Train ANN-RNNs to perform the IBL task and then dissect them.

iblvideo

Pose estimation for the IBL dataset

neuropixels_course_2024

Resources for the IBL portion of the UCL Neuropixels Course 2024

Jupyter Notebook

nma-ibl

Materials for NeuroMatchAcademy workshop for IBL data pipeline access

Jupyter Notebook

neurencoding

ibl-changepoint

Toolbox for change-point detection and ideal-observer analyses of IBL task data

Jupyter Notebook

brainregister

Python package for elastix-based registration of tissues to atlases; with mouse brain registration to the Allen CCFv3 built-in.

prior-localization

Project seeking to localize encoding of the task prior in the brain

iblscripts

Deployment scripts for ibl

Jupyter Notebook

ibllib-matlab

IBL set of Matlab tools and functions

viewephys

Neuropixel raw data viewer

ibl-viz

Gallery of visualizations and associated code

Jupyter Notebook

paper-reproducible-ephys

citricAcid

Urai AE, Aguillon-Rodriguez V, Laranjeira IC, Cazettes F, The International Brain Laboratory, Mainen ZF & Churchland AK (2021) Citric Acid water as an alternative to water restriction for high-yield mouse behavior. eNeuro, 8(1). doi: 10.1523/ENEURO.0230-20.2020

Jupyter Notebook

iblcourse

Repository containing courses on data usage

Jupyter Notebook

iblbrainviewer

IBL API for atlas web

iblatlas

IBL atlas module

paper-ephys-atlas

Code related to the electrophysiology atlas paper

sorting_analysis

WIP code for analyzing outputs of spike sorters

Jupyter Notebook

UCL_NeuroDataShare2023

examples of scripts how to use IBL-BWM dataset

Jupyter Notebook

behavior_models

ibl-sorter