instadeepai/InstaNovo instadeepai/InstaNovo

  • Stars
    star
    46
  • Rank 613,923 (Top 13 %)
  • Language
    Python
  • License
    Apache License 2.0
  • Created over 1 year ago
  • Updated about 2 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
instadeepai/InstaNovo
github

instadeepai

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

De novo peptide sequencing with InstaNovo: Accurate, database-free peptide identification for large scale proteomics experiments

More Repositories

1

Mava

đŸĻ A research-friendly codebase for fast experimentation of multi-agent reinforcement learning in JAX
Python
704
star
2

jumanji

🕹ī¸ A diverse suite of scalable reinforcement learning environments in JAX
Python
600
star
3

nucleotide-transformer

đŸ§Ŧ Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Python
363
star
4

flashbax

⚡ Flashbax: Accelerated Replay Buffers in JAX
Python
142
star
5

og-marl

Datasets with baselines for offline multi-agent reinforcement learning.
Python
127
star
6

tunbert

TunBERT is the first release of a pre-trained BERT model for the Tunisian dialect using a Tunisian Common-Crawl-based dataset. TunBERT was applied to three NLP downstream tasks: Sentiment Analysis (SA), Tunisian Dialect Identification (TDI) and Reading Comprehension Question-Answering (RCQA)
Python
92
star
7

AlphaNPI

Adapting the AlphaZero algorithm to remove the need of execution traces to train NPI.
Python
77
star
8

manyfold

đŸ§Ŧ ManyFold: An efficient and flexible library for training and validating protein folding models
Python
71
star
9

catx

🐈‍âŦ› Contextual bandits library for continuous action trees with smoothing in JAX
Python
61
star
10

marl-eval

A tool for aggregating and plotting MARL experiment data.
Python
59
star
11

poppy

đŸŒē Population-Based Reinforcement Learning for Combinatorial Optimization
Python
58
star
12

fastpbrl

Vectorization techniques for fast population-based training.
Python
52
star
13

FrameDiPT

FrameDiPT: an SE(3) diffusion model for protein structure inpainting
Jupyter Notebook
49
star
14

sebulba

đŸĒ The Sebulba architecture to scale reinforcement learning on Cloud TPUs in JAX
Python
46
star
15

awesome-marl

A categorised list of Multi-Agent Reinforcemnt Learning (MARL) papers
46
star
16

compass

🧭 COMPASS: Combinatorial Optimization with Policy Adaptation using Latent Space Search
Python
21
star
17

EGTA-NMARL

Experiments for performing empirical game-theoretic analysis of networked system control for common-pool resource management using multi-agent reinforcement learning.
Python
16
star
18

protein-sequence-bfn

Supporting code for our paper "Protein Sequence Modelling with Bayesian Flow Networks"
Python
14
star
19

bioclip

Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs
Python
12
star
20

DebateLLM

Benchmarking Multi-Agent Debate between Language Models for Truthfulness in Q&A.
Jupyter Notebook
12
star
21

gtc-course-2020

Tutorial on Multi-Agent Reinforcement for Train Scheduling
Python
11
star
22

LightMHC

LightMHC: A Light Model for pMHC Structure Prediction with Graph Neural Networks
Python
11
star
23

gcp-gpu-metrics

📈 Tiny Go binary that aims to export Nvidia GPU metrics to GCP monitoring, based on nvidia-smi.
Go
11
star
24

outer-value-function-meta-rl

Code of the paper: Debiasing Meta-Gradient Reinforcement Learning by Learning the Outer Value Function
Jupyter Notebook
10
star
25

matrax

A collection of matrix games in JAX
Python
9
star
26

qd-skill-discovery-benchmark

Neuroevolution is a Competitive Alternative to Reinforcement Learning for Skill Discovery
Python
9
star
27

scaling-resnets

⚡ī¸ A framework that investigates the scaling limit of ResNets and compares it to Neural ODEs. Tested on synthetic and standardized datasets. 📈
Python
5
star
28

IndabaX-TN-2023-RL

Jupyter Notebook
4
star
29

selective-reincarnation-marl

Official repository for Reduce, Reuse, Recycle: Selective Reincarnation in Multi-Agent Reinforcement Learning paper, accepted at the Reincarnating RL workshop at ICLR 2023.
Python
4
star
30

amld-africa-2021

Repository for the workshop at AMLD Africa 2021.
Jupyter Notebook
3
star
31

Indabax-Tunisia-2019

This repository contains the practical notebooks for the Indabax Tunisia 2019, held in Tunis on 13 April.
Jupyter Notebook
3
star
32

IndabaX-SA-2021

IndabaX-SA-2021
Jupyter Notebook
2
star
33

locust-predict

Locust breeding ground prediction using pseudo-absence generation and machine learning.
Jupyter Notebook
2
star
34

tpu-workshop

Materials for the TPU Workshop
Jupyter Notebook
1
star
35

SKAInnotate

Jupyter Notebook
1
star