Discover insightsengineering/tern.gee Open Source project

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Created over 2 years ago
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insightsengineering

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Create TLGs using Generalized Estimating Equations (GEE)

rtables

Reporting tables with R

224

teal

Exploratory Web Apps for Analyzing Clinical Trial Data

173

tern

Table, Listings, and Graphs (TLG) library for common outputs used in clinical trials

thevalidatoR

Github Action that generates R Package Validation documentation 🏁

teal.modules.clinical

Provides teal modules for the standard clinical trials outputs

random.cdisc.data

Create random CDISC data

teal.gallery

A Gallery of Exploratory Web Apps used for Analyzing Clinical Trial Data

rlistings

Value formatting and ASCII rendering infrastructure for tables and listings.

r.pkg.template

An opinionated R package template with CI/CD built-in

Shell

tlg-catalog

A catalog of Tables, Listings and Graphs (TLGs) created with NEST R packages

JavaScript

rbmi

Reference based multiple imputation R package

formatters

A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination.

sasr

cards

CDISC Analysis Results Data

scda

Access Synthetic CDISC Data from Archive Packages

JointSurvivalModels.jl

Julia implementation of joint models combining longitudinal and survival endpoints

Julia

cardx

R Package to Supplement ARD Functions Found in {cards}

teal.code

Code storage and execution class for teal applications

teal.slice

Reproducible slice module for teal applications

hermes

Preprocessing, analyzing, and reporting of RNA-seq data

ci-images

Insights Engineering Container Images

simIDM

Simulation Engine for Multistate Models

teal.modules.general

General Purpose Teal Modules

scda.2022

An archive of synthetic CDISC data for 2022

teal.reporter

Create and preview reports with Shiny modules

hex-stickers

hex sticker archive

teal.data

Data model for teal applications

teal.modules.hermes

RNA-seq analysis modules to add to a teal application

coverage-action

Github Action that generates a coverage summary using a Cobertura XML report

tern.mmrm

Create MMRM TLGs using lme4 and tern

ggplot2.utils

Utilities, in particular geoms and stats, for use with ggplot2

biomarker-catalog

Biomarker Analysis Templates of Tables And Graphs 📊

SCSS

teal.osprey

Community efforts to collect teal modules for TLGs defined in the osprey package

nestcolor

Package managing visual conventions of NEST graphs

goshawk

Functions that plot and summarize biomarkers/labs of interest

r-spellcheck-action

Github Action that performs a spell check on an R package

teal.logger

Logging setup for the teal family of packages

uniCATE

Univariate conditional average treatment effect estimation for predictive biomarker discovery

teal.widgets

shiny widgets for teal applications

presidio-cli

CLI tool that analyze Text for PII Entities with Microsoft Presidio framework.

Python

osprey

Community effort to collect TLG code and create a catalogue

depository

A depository for previously released R packages stemming from this organization.

HTML

staged-dependencies-action

Github Action to implement R development stages for package development

scda.2021

An archive of synthetic CDISC data for 2021

bioc-check-action

Github Action that runs Bioconductor-specific R package checks with BiocCheck.

teal.goshawk

Modules that produce web interfaces through which longitudinal visualizations can be dynamically

tern.rbmi

Create TLGs using rbmi and tern

unihtee

Tools for uncovering treatment effect modifiers in high-dimensional data.

teal.transform

Reproducible transform and merge module for teal applications

r-verdepcheck-action

Github Action to check if R package works correctly with minimum version of dependencies installed

bsafe

TBD

r-license-report

Github Action to generate an R Package Dependencies' License Report

nesttemplate

pkgdown template for NEST packages

JavaScript

scda.test

Package that runs tests for tern and scda

presidio-action

Github Action that analyze Text for PII Entities with Microsoft Presidio framework.

framework-scientific-apps

AMIA 2021 - Case study in the development of a framework for quality and reproducibility in inner-sourced packages and self-service analytic dashboards

TeX

codecollaboration

HTML

bonsaiforest

nest-2023-summeR

JavaScript

verdepcheck

An R package that tests your R package against the min/max versions of specified dependencies

teal.modules.bsafe

Teal modules for bsafe

covtracer-action

Github Action based on the Covtracer R package

r-pkgdown-multiversion

Github Action to generate multiple versions of pkgdown docs for R packages

insightsengineering/tern.gee

insightsengineering

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