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graphgram
Graph grammar librarydart
DNA, Amino Acid and RNA Testsbracery
Procedural text generator, somewhat compatible with Tracerygfftools
Perl scripts for working with the GFF formattrajectory-likelihood
Calculate indel trajectory likelihoods using methods of Miklรณs, Lunter & Holmes (2004), De Maio (2020), and Holmes (2020)dnastore
Software for error-tolerant coding of information into DNA sequences using finite-state transducers.abrowse
Multiple sequence alignment browserbbcmicrobot-codec
A wrapper for dasm and @bbcmicrobotzoogas
Z00 G45. A simple entropy-maximizing game on a Lotka-Volterra cellular automatonquaff
FASTA/FASTQ alignmenttree-align-view
A multiple alignment viewer with integrated phylogeny and structure browsing.carder
Lightweight wrapper to Gajus Kuizinas' Swing for building card-swiping interactive fiction on the web.gertie
bioe241
Materials for UC Berkeley class BioE241hg19-perl
Perl scripts for munging UCSC hg19 table dumpsstockholm-js
Parser for Stockholm formatboswell
IDE for multiplayer choice-based fictionrnastatalign-paper
Paper: "Evolutionary Triplet Models of Structured RNA", PLoS Comp Biol 2009funkscene
A series of interesting choices.ihh.github.io
Holmes lab websiteEvolPairHMM
Evolutionary Pair HMMtransducer-tutorial
spongelife
schooz
Scheme hypertext frameworkphylogenetic-likelihood
JavaScript implementation of phylogenetic likelihood calculationsnanopair
wikimess
Wiki Messengertag-parser
Algorithms to parse biological tree-adjoining grammarslatex-tutorial
jukes-cantor
Jukes-Cantor formula and distance matrixLove Open Source and this site? Check out how you can help us