idiv-biodiversity/submit-scripts

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idiv-biodiversity/submit-scripts

idiv-biodiversity

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collection of ready-to-use submit scripts for high performance computing

pandoc-cheat-sheet

cheat sheet templates for pandoc

LCVP

The Leipzig Catalogue of Vascular Plants

lcvplants

Large-scale taxonomic harmonization of plant names by fuzzy matching and synonymy resolution against the Leipzig Plant List as taxonomic backbone. Submission of single names or list of species names is possible.

ansible-role-lmod

git-knowledge-base

a collection of best practices and useful tips around git

StabilityII

scddl

scientific computing data set download

stor-age

show aging of directories

ansible-role-nrpe

Ansible role that installs and configures NRPE

ansible-role-systemd-timesyncd

Ansible role that configures systemd-timesyncd

2019_big_data_biogeography

General info, scripts and lectures for the 2019 Physalia course "Big data Biogeography" in Berlin. You can find more information on the webpage for the course: https://idiv-biodiversity.github.io/2019_big_data_biogeography/

ansible-role-systemd-resolved

Ansible role that installs and configures systemd-resolved

BACI_GLMM

Implementing a Generalized Linear Mixed Effects Model (GLMM) on a Before-After-Control-Impact (BACI) study design related to coastal dune restoration

grid-engine-tools

suite of utility tools for * Grid Engine

SpeciesPool

R Package to calculate plot-specific species pools using large vegetation databases

archive-sum

verify archive file integrity

mailto-uri

creates mailto URIs

ansible-role-repo-xcat

ansible role - xCAT repository

blastdl

Downloads NCBI's BLAST databases.

ansible-role-postfix

ansible role to install and configure postfix

pretty-accounting

toolkit for pretty RJMS / DRMS accounting

ansible-role-xinetd

ansible role that installs xinetd

psfu

pollen-limitation-data-descriptor

GloPL, a global data base on pollen limitation of plant reproduction

ansible-role-ntp

ansible role to install and configure ntp

pollen-limitation-land-use

Bennett, J.M., Steets, J.A., Burns, J.H. et al. Land use and pollinator dependency drives global patterns of pollen limitation in the Anthropocene. Nat Commun 11, 3999 (2020).

mmdu

disk usage for IBM Spectrum Scale file systems

ansible-role-mmmodules

ansible modules for IBM Spectrum Scale file systems

ansible-role-blastdl

install blast database download

git-cheat-sheet

cheat sheets for git users

plant-pollinator-romania

A review of European studies on pollination networks and pollen limitation, and a case study designed to fill in a gap

ansible-role-locale

ansible role to configure locale and virtual console keyboard

bromeliad

Distribution data for >3,200 Bromeliaceae species

sMon_Floramapping

Code for the app to map floristic occurrence data for 2245 plant taxa in GErmany between 1960 and 2017.

Intro_tidyverse

archive

create an archive and verify its contents

ansible-role-screen-switch

switch screens on/off with working hours

ansible-role-sysstat

ansible role that installs sysstat and configures it

ckit

distributed monitoring for resource and job management systems

macro_and_global_change

Find the course webpage here:

iCodeQA

ReSurveyGermany_Analysis

R code to retrieve resurvey ID x species x time interval combinations and analyse the data

ansible-role-systemd-journald

Ansible role that configures systemd-journald

mpi-info

small program checking MPI

reflections_pollination_ecology

Text mining of literature in the field of pollination ecology

ansible-role-nvidia-driver

ansible role to install the official nvidia driver

ansible-role-ssl-certificates

ansible role to install ssl certificates

Read_ReSurveyGermany

Code to read read the plot-species-abundance file of ReSurveyGermany and combine it with the header data

ansible-role-tftpd

ansible role that installs and configures tftpd

ansible-role-ssh

Ansible role that installs and configures SSH

ReSurveyGermany_null_models

R code to produce the null models in Jandt et al. (2022), Nature

BiodiversityLiterature

Evolution of interdisciplinarity in biodiversity science

Cocktail

R-Code for Cocktail clustering, a hierarchical agglomerative cluster algorithm for extracting species groups in vegetation databases