iPlantCollaborativeOpenSource/iplant-treerec

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Created over 13 years ago
Updated over 10 years ago

iPlantCollaborativeOpenSource/iplant-treerec

iPlantCollaborativeOpenSource

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Back end services that power iPlant's Tree Reconciliation.

Robotframework-MongoDB-Library

A library for interacting with MongoDB from RobotFramework

TNRS

The Taxonomic Name Resolution Service is a free utility for correcting and standardizing plant names.

python-irodsclient

A python API for iRODS

irods-vagrant

Sets up a Vagrant VM running Ubuntu 14.04 LTS with a minimal iRODS install.

iPlant-Atmosphere

hyper-stats

A service to collect VM stats from libvirt.

datastore-public

A web-based file browser for iRODS with metadata-based templating.

IBP

Integrated Breeding Platform

atmosphere-apiary-docs

API Documentation for Atmosphere

crushbone

Atmosphere install, test, configuration, analysis and utility scripts.

rfive

Drop-in Fabric deploy for libcloud

irods4-upgrade-env

A collection of docker containers that mimic our production environment intended to test our iRODS 4 upgrade process

BTI_iPlant_RNAseq

Updates required to support integration into the iPlant DE

saml

Library for create assertions in Security Assertion Markup Language (SAML) format.

chinstrap

dnasubway-apps

Docker and Singularity-compatible versions of DNA Subway apps

tardis-apis

Tracking and Retreiving Data Interface Service, iPlant's provenance collector api

phyloparser

A library to parse common phylogenetic formats.

DiscoveryEnvironmentShared

Libraries shared by the DiscoveryEnvironment and DiscoveryEnvironmentBackend repositories.

FileQuirks

FileQuirks is a system which enables you to check the type of your raw text file containing biological data.

Tree-Reconciliation-Ontology

tr-standalone

iPlant Tree Reconciliation Viewer

confluence-client

A Confluence interface for the Discovery Environment

securitymodule

A Mule module for securing service-endpoints with SAML assertions.

Sheldon_DE_utils

perl scripts and libraries supporting Sheldon McKay DE Applications

irodsfile

iRODS File handling utilities.

jlrproxytoolkit

Java Language Reflection Proxy Toolkit for use with Mule.

iPlant_phyloviewer

GWT-based phylogenetic viewer

irods-3.3.1-iplant

This is a fork of the iRODS based on the 3.3.1 released.

de-buggalo

Special purpose phylogenetic tree processing service.

idpauthn

Identity Provider Authentication module.

iplant-ncl

iPlant repackaging of NEXUS Class Library

securitytoolkit

Security and Authentication related toolkit for working with Shibboleth & SAML.

muletoolkit

A toolkit for classes used within Mule.

CAS-Extensions

Custom extensions to CAS

ncbi-sra-submit

This project contains python scripts and XML templates for generating SRA submissions from iPlant Collaborative Data Store metadata and a Bio Project input directory.