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RiboDetector
Accurate and rapid RiboRNA sequences Detector based on deep learningHaploflow
epitope-prediction
Quasimodo
QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixturePhylogeography_Paper
This repository contains all data and code for the manuscript "Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic".epitope-prediction-paper
Data and results for the EpitopeVec paperPredicting_PA_AMR_paper
seq2geno2pheno
BarleyMeta
scripts to reproduce the analysis and figures from Bulgarelli et al., 2015FrechetTreeDistance
This repository contains all code and data for the manuscript "A FrΓ©chet tree distance measure to compare phylogeographic spread paths across trees"AMR_benchmarking
SDplots
This repository contains all published data.GitHub
seq2geno
Reproducible and comprehensive sequence analyses for single-species bacterial datasetscelestial-paper-materials-devel
The lineage tree reconstruction method based on Steiner tree problem - dataset and test scripts for the paper (development version)SDplots_VaccineUpdates
Vaccine strain recommendations for human influenza A viruses with the method described in Klingen et al. 2017covid-germany-mcmc
SARS-CoV-2 lineage importations and spread are reduced after nonpharmaceutical interventions in phylogeographic analysesModel-T
CoronaDataVis
Visualization and statistics of SARS-Cov2 dataPPSplus
art_illumina_profiles
snakemake pipeline to generate art_illumina profiles from public datasetsAntiPatch
This repository contains all published data.seq2geno-dev
Computational pipeline for genomic features of bacterial populationmdasim
MDAsim 2: a Multiple Displacement Amplification Simulator (continued development from: https://sourceforge.net/projects/mdasim/)corona_lineage_dynamics
SDPlots scripts for the coverage serverPatchInference
This repository contains the source code to the graph-cut clustering algorithm.Love Open Source and this site? Check out how you can help us