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elm-imicrobe-spa
docker-mothur
Docker image for running mothur.biosys-analytics
BE434/535 Biosystems Analyticsappetizer
Create the app.json for Stampedeplanet-microbe-functional-annotation
gnu-parallel-yourself
Template script and instructions for using GNU Parallel in place of the TACC Launcher on Stampede2.WGCNA-of-Type-II-Diabetic-Skin
WGCNA of Type II Diabetic Skinphage_detection_benchmarks
Code used to benchmark metagenomic phage detection tools.orminator
Generate SQLAlchemy ORM classes for an existing database.singularity-phispy
Singularity container for phispybacteria-bowtie
Simple bioinformatics pipeline to align / count RNA reads to a bacterial genome with bowtie2 / cuffnorm and cuffquantimicrobe-lib
General purpose scripts and libraries for iMicrobe.centrifuge-filter
Use Centrifuge calls to filter sequence (FASTA) into accepted/rejectedimicrobe-mash-node2vec
Scripts to learn and cluster a vector-space embedding on all-vs-all iMicrobe MASH distance matrix.centrifuge
Run Centrifuge on Stampedeplanet-microbe-datapackages
Data packages for the Planet Microbe projectelm-imicrobe-search
node-imicrobe
Node app server for iMicrobe dataivirus-mojo
Mojo for iVirusbiosystems-analytics-2020
434/534 Biosystems Analytics course at the University of Arizonameowl
Microbial Environments described using OWL (MEOWL)fizkin
All-vs-all sequence comparison for WGSkmerizer
Working with k-mersviral-learning
Deep learning demonstration code.planet-microbe-app
Planet Microbe - Semantic search across โomics, environmental, and physiochemical data layers.Host-Screen
Utilizes Bowtie2 to remove host contaminated read from Fasta/q filesLove Open Source and this site? Check out how you can help us