hurwitzlab/gnu-parallel-yourself

Stars
2
Language
Shell
License
MIT License
Created over 6 years ago
Updated over 6 years ago

hurwitzlab/gnu-parallel-yourself

hurwitzlab

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Template script and instructions for using GNU Parallel in place of the TACC Launcher on Stampede2.

elm-imicrobe-spa

docker-mothur

Docker image for running mothur.

biosys-analytics

BE434/535 Biosystems Analytics

appetizer

Create the app.json for Stampede

planet-microbe-functional-annotation

WGCNA-of-Type-II-Diabetic-Skin

WGCNA of Type II Diabetic Skin

phage_detection_benchmarks

Code used to benchmark metagenomic phage detection tools.

orminator

Generate SQLAlchemy ORM classes for an existing database.

singularity-phispy

Singularity container for phispy

bacteria-bowtie

Simple bioinformatics pipeline to align / count RNA reads to a bacterial genome with bowtie2 / cuffnorm and cuffquant

imicrobe-lib

General purpose scripts and libraries for iMicrobe.

centrifuge-filter

Use Centrifuge calls to filter sequence (FASTA) into accepted/rejected

imicrobe-mash-node2vec

Scripts to learn and cluster a vector-space embedding on all-vs-all iMicrobe MASH distance matrix.

centrifuge

Run Centrifuge on Stampede

planet-microbe-datapackages

Data packages for the Planet Microbe project

elm-imicrobe-search

node-imicrobe

Node app server for iMicrobe data

ivirus-mojo

Mojo for iVirus

biosystems-analytics-2020

434/534 Biosystems Analytics course at the University of Arizona

meowl

Microbial Environments described using OWL (MEOWL)

Web Ontology Language

fizkin

All-vs-all sequence comparison for WGS

kmerizer

Working with k-mers

mash

viral-learning

Deep learning demonstration code.

planet-microbe-app

Planet Microbe - Semantic search across ‘omics, environmental, and physiochemical data layers.

Host-Screen

Utilizes Bowtie2 to remove host contaminated read from Fasta/q files