hstrey/Hidden-Markov-Models-pymc3

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hstrey/Hidden-Markov-Models-pymc3

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Implementation of Hidden Markov Models in pymc3

Ornstein-Uhlenbeck-Bayesian

Jupyter Notebook

MicroFluidicsController

Open Hardware Microfluidics Controller Arduino Shield

BLEShieldConnect

SigmaCamp-2023

code that was developed during SigmaCamp 2023

Jupyter Notebook

Ornstein-Uhlenbeck-AddedNoise

This repository is for work on estimating parameters from data that originates from an Ornstein-Uhlenbeck process with measurement noise

Jupyter Notebook

BDTools.jl

Tools for data analysis of BrainDancer Dynamic Phantom data

SigmaCamp-2022

Dynamical System Simulations in Julia

Modeling-SDEs

here we keep examples of parameter estimation methods for SDEs

siRNA-silencing

data analysis for siRNA silencing project

Jupyter Notebook

Single-molecule-FRET-HMM

pymc3 implementation of single molecule FRET hidden Markov model analysis

Jupyter Notebook

BME-573-2020

repository for my class iPhone programming for biomedical applications

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ShowMatPlotLib

BrainDancer

BrainDancer analysis in Julia

SchoolNova-Computer-Science

here I am keeping the code for SchoolNova Computer Science 1&2

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covid19

my attempts to making sense (bayesian/probabilistic) of the infection and testing data

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FPAging

module to create probability distributions from solutions of a Fokker-Planck equation

Ornstein-Uhlenbeck-Correlations

this repository contains simulations and functions to estimate parameters from correlated OU-processes

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FCS-fitting

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sigma_etapa_2024

repository for code that we used for the probabilistic programming at ETAPA SigmaCamp 2024

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