hemberg-lab/scRNA.seq.funcs

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Created over 8 years ago
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hemberg-lab/scRNA.seq.funcs

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R package containing our own functions used in the scRNA.seq.course

scRNA.seq.datasets

Collection of public scRNA-Seq datasets used by our group

SC3

A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments

scmap

A tool for unsupervised projection of single cell RNA-seq data

scfind

SC3-paper-figures

Scripts to recreate figures from the SC3 paper

D3E

Discrete Distributional Differential Expression

sc3s

Single Cell Consensus Clustering with Speed

MicroExonator

Snakemake pipeline for microexon discovery and quantification

scmap-shiny

scmap-paper-figures

Scripts to recreate figures from the scmap paper

scfind-paper-figures

Scripts to recreate figures from the scfind paper

scfindME

scfindME adaps scfind to alternative splicing analysis

Jupyter Notebook

scASfind

Identification of cell type-specific alternative splicing events using scASfind

FastSC3

A tool for fast unsupervised clustering of very large single cell RNA-Seq data

scfind-shiny

tutorials

MPRAnator

A webtool to create DNA sequence variants

nrg-paper-figures