hbctraining/bioinformatics_online

Stars
19
Rank 1,163,249 (Top 23 %)
Language SCSS
Created over 4 years ago
Updated 12 months ago

hbctraining/bioinformatics_online

hbctraining

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Resource list and preparation instructions for online learning and teaching for Bioinformatics

scRNA-seq

scRNA-seq_online

In-depth-NGS-Data-Analysis-Course

DGE_workshop

Training-modules

Materials for short, half-day workshops

Jupyter Notebook

Intro-to-ChIPseq

Intro to ChIPseq using HPC

Intro-to-rnaseq-hpc-O2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

DGE_workshop_salmon_online

Intro-to-R

Intro-to-rnaseq-hpc-salmon-flipped

Introduction to bulk RNA-seq

Intro-to-R-flipped

DGE_workshop_salmon

Intro-to-ChIPseq-flipped

Intro-to-R-with-DGE

main

Intro-to-rnaseq-hpc-salmon

Intro-to-shell-flipped

Accessing_public_genomic_data

Tutorials on accessing public reference and genomic data

variant_analysis

publication_perfect

Six hour hands-on to creating publication-quality plots in R

Intro-to-Shell

Introduction to the Unix shell

rnaseq_overview

Short course describing the considerations for a successful RNA-seq experiment

rnaseq-cb321

Intro-to-Unix-archived

Materials for a 2-day introduction to the bash language, the Linux OS, and high-performance computing.

Intro-to-rnaseq-hpc-gt

Introduction to RNA-seq using HPC

Intro-to-rnaseq-hpc-orchestra

This repository has teaching materials for a 2-day Introduction to RNA-sequencing data analysis workshop using the Orchestra Cluster.

versioning_data_scripts

GitKraken lesson (forked from HBS-RCS)

Peak_analysis_workshop

An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq

reproducibility-tools

Intro-to-rnaseq-fasrc-salmon-flipped

GCC-BOSC-2018

Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018

Intro-to-shell-fasrc-flipped

Shell training materials for the FAS-RC cluster

RNA-seq-CB321qc_2022

Teaching RNA-seq experimental design and analysis + data storage and sharing for genomics data

Rmarkdown_analysis_reports

Intro-to-R-online-Catalyst

Contains materials for an online version of the Introduction to R

EpiR

Introduction to R for Epi summer program

datafest2021_Rmarkdown

version-control-gitkraken

Galaxy_RNA-Seq