• Stars
    star
    5
  • Rank 2,861,937 (Top 57 %)
  • Language
    TeX
  • License
    MIT License
  • Created almost 7 years ago
  • Updated about 5 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Compilation of rmarkdown templates for bioinformatics analysis

More Repositories

1

knowledgebase

recipes that save time
TeX
121
star
2

bcbioRNASeq

R package for bcbio RNA-seq analysis.
R
58
star
3

projects

In-progress projects at Harvard School of Public Health Bioinformatics Core
Python
40
star
4

edX

Course materials for the edX Data Analysis for Genomics
HTML
35
star
5

bcbioSingleCell

R package for bcbio single-cell RNA-seq analysis.
R
29
star
6

tinyatlas

A tiny cell atlas for commonly sequenced organisms.
26
star
7

NGS_Data_Analysis_Course

HTML
22
star
8

tutorials

This repo contains tutorials for different NGS analysis methods
R
12
star
9

NGS-Data-Analysis-long-course

HTML
11
star
10

revigoR

Scripts for accessing revigo gene ontology plots from R
R
9
star
11

NGS_Data_Analysis_Summer2016

Materials for NGS Data Analysis Course Summer 2016
HTML
9
star
12

li_hiv

HIV integration project
Python
6
star
13

Intro-to-Unix

Workshop for Intro to Unix
Shell
4
star
14

giab_remap_38

Remap the Genome in a Bottle NA12878 validation variant calls to human genome build 38
Perl
3
star
15

methods

TeX
3
star
16

drosophila-midgut-analysis

Analysis scripts for 'A cell atlas of the adult drosophila midgut'
HTML
3
star
17

tumor-only-prioritization

Validate prioritization of tumor-only variant calling
Python
2
star
18

johnson_rnaseq

Results for the MJ RNA-seq experiment
R
2
star
19

Intro-to-R-extended

Intro to R materials for 6 hour workshop
2
star
20

novitsky_hiv

HIV quality control, assembly and minority detection
Shell
2
star
21

bcbioBase

Base functions for bcbio R packages.
R
2
star
22

CHBUtils

Utility functions in R
R
2
star
23

poulopoulos-growthcone-rnaseq

Poulopoulos growthcone RNA-seq project analysis
HTML
1
star
24

isaac-comparison

Compare iSAAC speed and quality to bwa + GATK
1
star
25

schaeffer-miRNA

HTML
1
star
26

dc_2016_04

Data Carpentry materials for Jackson Labs workshop
1
star
27

bonventre-indrop

HTML
1
star
28

wu_hiv_pooled_dr

Call HIV minority variants and annotate with drug resistance mutations
Python
1
star
29

GABE_course

Hands on Ensembl session for GABE course 2016
1
star
30

breakfast

Details about the monthly breakfast hosted by the Harvard Chan Bioinformatics Core
CSS
1
star
31

li_hiv_call3

Python
1
star
32

fabio-splicing

HTML
1
star
33

Intro-to-R

Intro to R course materials for BCMP retreat 2015
1
star
34

DGE_workshop

One day class to perform DE analysis in R. Follow-up for students who took the R course
1
star
35

StemCellCommons

Stem cell bioinformatics
1
star
36

Intro-to-R-QMB

1
star
37

msteinhauser_starvation_timeseries

code for paper figures and analysis
TeX
1
star
38

tailseq-tool-daley

code used for analysis of TailSeq data generated at Daley's group
Python
1
star
39

kobzik_macrophage

RNA-seq analysis for macrophage sequencing
1
star
40

mammoth_code

python package to find African elephant genes into mammoth assembled genome
Python
1
star
41

rowe2020_indrop_citeseq_hbc03948

Shell
1
star
42

Molecular-convergence-between-Down-syndrome-and-Fragile-X-syndrome-hPSCs

Code repository for the paper "Molecular convergence between Down syndrome and Fragile X syndrome identified using human pluripotent stem cell models"
TeX
1
star
43

overmoyer2021_RNAseq_analysis_of_inflammatory_breast_cancer_hbc04141

HTML
1
star
44

hbc_kim_ATACseq_BRG1_hbc04466

ATACseq of BRG1
HTML
1
star
45

HBC04813_Schatton_mouse_ATACseq

R
1
star
46

MouseKidneyFibrOmics

Repository with the analysis of two kidney fibrosis models in mouse
HTML
1
star