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knowledgebase
recipes that save timebcbioRNASeq
R package for bcbio RNA-seq analysis.projects
In-progress projects at Harvard School of Public Health Bioinformatics CorebcbioSingleCell
R package for bcbio single-cell RNA-seq analysis.tinyatlas
A tiny cell atlas for commonly sequenced organisms.NGS_Data_Analysis_Course
tutorials
This repo contains tutorials for different NGS analysis methodsNGS-Data-Analysis-long-course
revigoR
Scripts for accessing revigo gene ontology plots from RNGS_Data_Analysis_Summer2016
Materials for NGS Data Analysis Course Summer 2016li_hiv
HIV integration projecthbcABC
Compilation of rmarkdown templates for bioinformatics analysisIntro-to-Unix
Workshop for Intro to Unixgiab_remap_38
Remap the Genome in a Bottle NA12878 validation variant calls to human genome build 38methods
drosophila-midgut-analysis
Analysis scripts for 'A cell atlas of the adult drosophila midgut'tumor-only-prioritization
Validate prioritization of tumor-only variant callingjohnson_rnaseq
Results for the MJ RNA-seq experimentIntro-to-R-extended
Intro to R materials for 6 hour workshopnovitsky_hiv
HIV quality control, assembly and minority detectionbcbioBase
Base functions for bcbio R packages.CHBUtils
Utility functions in Rpoulopoulos-growthcone-rnaseq
Poulopoulos growthcone RNA-seq project analysisisaac-comparison
Compare iSAAC speed and quality to bwa + GATKschaeffer-miRNA
dc_2016_04
Data Carpentry materials for Jackson Labs workshopbonventre-indrop
wu_hiv_pooled_dr
Call HIV minority variants and annotate with drug resistance mutationsGABE_course
Hands on Ensembl session for GABE course 2016breakfast
Details about the monthly breakfast hosted by the Harvard Chan Bioinformatics Coreli_hiv_call3
fabio-splicing
Intro-to-R
Intro to R course materials for BCMP retreat 2015DGE_workshop
One day class to perform DE analysis in R. Follow-up for students who took the R courseStemCellCommons
Stem cell bioinformaticsIntro-to-R-QMB
msteinhauser_starvation_timeseries
code for paper figures and analysistailseq-tool-daley
code used for analysis of TailSeq data generated at Daley's groupkobzik_macrophage
RNA-seq analysis for macrophage sequencingmammoth_code
python package to find African elephant genes into mammoth assembled genomerowe2020_indrop_citeseq_hbc03948
Molecular-convergence-between-Down-syndrome-and-Fragile-X-syndrome-hPSCs
Code repository for the paper "Molecular convergence between Down syndrome and Fragile X syndrome identified using human pluripotent stem cell models"overmoyer2021_RNAseq_analysis_of_inflammatory_breast_cancer_hbc04141
hbc_kim_ATACseq_BRG1_hbc04466
ATACseq of BRG1HBC04813_Schatton_mouse_ATACseq
MouseKidneyFibrOmics
Repository with the analysis of two kidney fibrosis models in mouseLove Open Source and this site? Check out how you can help us